Job Description P0AG67 Confidence 100.00% Date Thu Jan 5 11:28:15 GMT 2012 Rank 1 Aligned Residues 235 % Identity 20% Template c3go5A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution Resolution 1.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	P	E	G	T	K	L	T	G	R	V	T	N	L	T	D	Y	G	C	F	V	E	I	E	E	G	V	E	G	L	V	H	V	S	E	M	D	W	T	N	K	N	I	H	P	S	K	V	V	N	V	G	D	V	V	E	V	M	V	L	D	I	D	E	E	R	R	R	I	S	L	G	L	K	Q	C	K	A	N
Query Conservation
Alig confidence																													.												.	.	.	.	.	.	.	.	.	.	.													.	.												.	.	.	.	.
Template Conservation																													.												.	.	.	.	.	.	.	.	.	.	.													.	.												.	.	.	.	.
Template Sequence		N	T	N	L	A	S	F	I	V	G	L	I	I	D	E	N	D	R	F	Y	F	V	Q	K	D	G	Q	.	T	Y	A	L	A	K	E	E	G	Q	H	.	.	.	.	.	.	.	.	.	.	.	T	V	G	D	T	V	K	G	F	A	Y	T	.	.	D	X	K	Q	K	L	R	L	T	T	L	.	.	.	.	.
Template Known Secondary structure			T	T	T	T												S	S							T	T		.						G	G	G				.	.	.	.	.	.	.	.	.	.	.		T	T	S									.	.		T	T	S							S	.	.	.	.	.
Template Predicted Secondary structure																													.												.	.	.	.	.	.	.	.	.	.	.													.	.												.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																										.									.
Query SS confidence																										.									.
Query Sequence		P	W	Q	Q	F	A	E	T	H	N	K	G	D	R	V	E	G	K	I	K	S	I	T	D	.	F	G	I	F	I	G	L	D	.	G	G	I	D	G	L	V	H	L	S	D	I	S	W	N	V	A	G	E	E	A	V	R	E	Y	K	K	G	D	E	I	A	A	V	V	L	Q	V	D	A	E	R	E	R	I	S
Query Conservation																										.									.
Alig confidence		.	.	.	.	.																				.									.															.	.	.	.	.																.
Template Conservation		.	.	.	.	.																																												.	.	.	.	.																.
Template Sequence		.	.	.	.	.	E	V	T	A	T	Q	D	Q	F	G	W	G	R	V	T	E	V	R	K	D	L	G	V	F	V	D	T	G	L	P	D	K	E	I	V	V	S	L	D	I	L	P	E	.	.	.	.	.	L	K	E	L	W	P	K	K	G	D	Q	L	Y	I	R	.	L	E	V	D	K	K	D	R	I	W	G
Template Known Secondary structure		.	.	.	.	.				S		S	S	S											T	T	T							S		T	T							G	G	G	S		S	.	.	.	.	.	S	G	G	G	S			T	T							.					T	T	S
Template Predicted Secondary structure		.	.	.	.	.																																												.	.	.	.	.																.
Template SS confidence
							63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	G	V	K	Q	L	A	E	D	P	F	N	N	W	V	A	L	N	K	K	G	A	I	V	T	G	K	V	T	A	V	D	A	K	G	A	T	V	E	L	.	A	D	G	V	E	G	Y	L	R	A	S	E	A	S	R	D	R	V	E	D	A	T	L	V	L	S	V	G	D	E	V	E	A	K	F	T	G	V	D
Query Conservation																																										.
Alig confidence																																										.																	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.
Template Sequence		L	L	A	Y	Q	E	D	F	Q	R	L	A	R	P	A	Y	N	N	X	Q	N	Q	N	W	P	A	I	V	Y	R	L	K	L	S	G	T	F	V	Y	L	P	E	N	N	X	L	G	F	I	H	P	S	E	R	Y	A	E	.	.	.	.	.	.	.	.	P	R	L	G	Q	V	L	D	A	R	V	I	G	F	R
Template Known Secondary structure																		S			T	T												T	T							T	T	T	T							G	G	G		S	S		.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.				.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		R	K	N	R	A	I	S	L	S	V	R	A	.	.	.	K	D	E	A	D	E	K	D	A	I	A	T	V	N	K	Q	E	D	A	N	F	S	N	N
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		E	V	D	R	T	L	N	L	S	L	K	P	R	S	F	E	X	L	E	N	D	A	Q	X	I	L	T	Y	L	E	S	N	G	G	F	X	T	L	N
Template Known Secondary structure		T	T	T	T							S																					T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions