Job Description P0AG67 Confidence 99.05% Date Thu Jan 5 11:28:15 GMT 2012 Rank 39 Aligned Residues 71 % Identity 21% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.													.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	K	K	G	A	I	V	T	G	K	V	T	A	V	D	A	K	G	A	T	V	E	L	A	D	G	V	E	G	Y	L	R	A	S	E	A	S	R	D	R	V	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	T	L	V	L	S	V	G	D	E	V	E	A	K	F	T	G	V	D	R	K	N	R	A
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	G	L	F	T	E	I	.	G	P	M	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D	K	N	D
Template Known Secondary structure					T	T												T	T							.	T	T							G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T														T	T
Template Predicted Secondary structure																										.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		515	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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