Job Description P0AG67 Confidence 99.42% Date Thu Jan 5 11:28:15 GMT 2012 Rank 28 Aligned Residues 172 % Identity 12% Template c1l2fA_ PDB info PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain Resolution 2.50 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																										.	.																				.	.
Query SS confidence																																										.	.																				.	.
Query Sequence		K	A	K	R	H	E	A	W	I	T	L	E	K	A	Y	E	D	A	E	T	V	T	G	V	I	N	G	K	V	K	G	G	F	T	V	E	L	N	G	I	.	.	R	A	F	L	P	G	S	L	V	D	V	R	P	V	R	D	T	L	H	.	.	L	E	G	K	E	L	E	F	K	V	I	K	L	D	Q	K	R
Query Conservation																																										.	.																				.	.
Alig confidence																																										.	.																				.	.
Template Conservation
Template Sequence		P	I	L	E	K	A	L	V	S	A	Y	R	K	N	F	G	N	S	K	N	V	E	V	V	I	D	R	N	T	G	N	I	K	V	Y	Q	L	L	E	V	V	E	E	V	E	D	P	A	T	Q	I	S	L	E	E	A	K	K	I	D	P	L	A	E	V	G	S	I	V	K	K	E	L	N	V	K	N	F	G	R
Template Known Secondary structure																S		S	S	S								T	T	T													S			S		T	T	T									T	T	S	S	S			S	S	B										S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		N	N	V	V	V	S	R	R	A	V	I	E	S	E	N	S	A	E	R	D	Q	L	L	E	N	L	.	.	Q	E	G	M	E	V	K	G	I	V	K	N	L	T	D	Y	G	A	F	V	D	L	G	G	V	D	G	L	L	H	I	T	D	M	A	W	K	R	V	K	H	P	S	E	I	V	N	V	G	D	E	I
Query Conservation																												.	.
Alig confidence																												.	.																																				.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		I	A	A	Q	T	A	K	Q	V	L	I	Q	R	I	R	E	L	E	K	E	K	Q	F	E	K	Y	S	E	L	K	G	T	V	T	T	A	E	V	I	R	V	X	G	E	W	A	D	I	R	I	G	K	L	E	T	R	L	P	K	K	E	W	I	.	.	.	.	.	.	P	G	E	E	I	K	A	G	D	L	V
Template Known Secondary structure																													T	T	T	T	S											S	S							T	T							G	G	G	S		.	.	.	.	.	.	T	T					T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	K	V	L	K	F	D	R	E	R	T	R	V	S	L	G	L	K	Q	L	G	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	Y	I	I	D	V	V	K	T	T	K	G	P	K	I	L	V	S	R	R	V	P	E
Template Known Secondary structure												T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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