Job Description P75990 Confidence 100.00% Date Thu Jan 5 12:17:01 GMT 2012 Rank 2 Aligned Residues 379 % Identity 17% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.
Predicted Secondary structure																																																						.	.	.	.	.																	.	.	.	.
Query SS confidence																																																						.	.	.	.	.																	.	.	.	.
Query Sequence		L	T	T	L	I	Y	R	S	H	I	R	D	D	E	P	V	K	K	I	E	E	M	V	S	I	A	N	R	R	N	M	Q	S	D	V	T	G	I	L	L	F	N	G	S	H	F	F	Q	L	L	E	G	.	.	.	.	.	P	E	E	Q	V	K	M	I	Y	R	A	I	C	Q	D	P	.	.	.	.	R	H	Y
Query Conservation																																																						.	.	.	.	.																	.	.	.	.
Alig confidence																																																						.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		L	R	T	E	S	Y	Q	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L	L	K	A	V	G	E	Q	L	S	R	E	C	A	K	Y	P	E	T	Q
Template Known Secondary structure								B		T	T	T	S	S														T	T		T	T	T												S																														S	S		S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		73	.	.	.	.	.	.	80	.														.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	V	E	L	L	C	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	R	R	F	G	K	A	G	M	E	L	F	D	L	R	L	H	E	R	D	D	V	L	Q	A	V	F	D	K	G	T	S	K	F	Q	L	T	Y	D	D	R	A	L	Q	F	F	R	T	F	V	L	A	T	E	Q	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																																																													.
Template Sequence		N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	.	D	S	P	Q	A	V	L	S	L	G	D	Q	A	L	A	Q	A	E	G	Q
Template Known Secondary structure		T							T	T								T																		T						T	S		S		T	T											T	T	.																			S
Template Predicted Secondary structure																																																													.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																					.	.													.															.	.	.	.	.
Query SS confidence																																					.	.													.															.	.	.	.	.
Query Sequence		T	Y	F	E	I	P	A	E	D	S	W	L	F	I	A	D	G	S	D	K	E	L	D	S	C	A	L	S	P	T	I	N	D	H	F	.	.	A	F	H	P	I	V	D	P	L	S	R	R	.	I	I	A	F	E	A	I	V	Q	K	N	E	D	S	.	.	.	.	.	P	S	A	I	A	V	G	Q	R	K	D
Query Conservation																																					.	.													.															.	.	.	.	.
Alig confidence													.	.	.	.	.	.																			.	.													.															.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		G	E	Q	N	W	A	C	L	D	G	D	.	.	.	.	.	.	D	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F
Template Known Secondary structure		S	S		S								.	.	.	.	.	.	S														T	T												S	S		T	T														T	T	S														T	T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.							.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	I	Y	T	A	D	L	K	S	K	A	L	A	F	T	M	A	H	A	L	E	L	G	D	K	M	I	S	I	N	L	L	P	M	T	L	V	N	E	P	D	A	V	S	F	L	L	N	E	I	K	A	N	A	L	V	P	E	Q	I	I	V	E	F	T	E	S	E	V	I	S	R	F	D	E	F	A	E	A
Query Conservation
Alig confidence																										.	.	.											.																															.
Template Conservation																										.	.	.											.																															.
Template Sequence		G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	H	E	E	S	.	.	.	L	A	L	N	L	S	S	A	T	L	.	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	.	Q	L	P	E	Q	A	V	L	E	Q	L
Template Known Secondary structure		T																	G	G	G					.	.	.											.		S	S													T	G	G	G	T	T	T							G	G	.	G
Template Predicted Secondary structure																										.	.	.											.																															.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.				.	.	.	.	500	.	.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.		.	.	.	.	540	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	S	L	K	A	A	G	I	S	V	A	I	D	H	F	G	A	G	F	A	G	L	L	L	L	S	R	F	Q	P	D	R	I	K	I	S	Q	E	L	I	T	N	V	H	K	S	G	P	R	Q	A	I	I	Q	A	I	I	K	C	C	T	S	L	E	I	Q	V	S	A	M	G	V	A	T	P	E	E	W	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	S
Template Known Secondary structure								T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	E	S	A	G	I	E	M	F	Q	G	D	L	F	A	K	A	K	L	N	G	I	P	S
Query Conservation
Alig confidence																				.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	.	.	.	.	K	P	W
Template Known Secondary structure					T	T	T		S				S	G	G	G				.	.	.	.	B
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.					.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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