Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Sequence		M	N	K	F	I	K	V	A	L	V	G	A	V	L	A	T	L	T	A	C	T	G	H	I	E	N	R	D	K	N	C	S	Y	D	Y	L	L	H	P	A	I	S	I	S	K	I	I	G	G	C	G	P	T	A	Q
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?														?	?	?	?			?		?																				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wfh chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 34.1% Identity: 25% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 PDB 1wfp chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 33.6% Identity: 25% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 PDB 1wg2 chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 32.9% Identity: 31% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 PDB 1x4w chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 31.3% Identity: 25% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein flj13222; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein flj13222 Phyre2 PDB 1wff chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 26.7% Identity: 38% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 PDB 1wfl chain A Region: 20 - 35 Aligned: 16 Modelled: 16 Confidence: 23.5% Identity: 44% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 1 d1wfha_ 2 d1wfpa_ 3 d1wg2a_ 4 c1x4wA_ 5 d1wffa_ 6 d1wfla_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wfha_ 34.1 25 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 2 d1wfpa_ 33.6 25 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 3 d1wg2a_ 32.9 31 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 4 c1x4wA_ 31.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein flj13222; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein flj13222 5 d1wffa_ 26.7 38 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 6 d1wfla_ 23.5 44 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0