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Job DescriptionP39325
Confidence100.00%DateThu Jan 5 11:59:21 GMT 2012
Rank9Aligned Residues284
% Identity19%Templated2fvya1
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution0.92

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.. .......60.........70.........80.........90.........100.
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Query Sequence  PLTVGFSQVGSESGWRAAETNVAKSEAEKR. GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK
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Template Sequence  DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR
Template Known Secondary structure 
S
TTST
TT
TT
TT
S

SSGGG
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   102.......110....... ..120.........130.........140.........150 .........160.........170
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Query Sequence  DAEIPVFLLDRSIDVK. . DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPC. . . . . . . . . NVVELQGTVGASVAIDRKKG
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Template Sequence  GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY
Template Known Secondary structure  TTT

SS


T
TT


GGG
TT
SSS
STT
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  FAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV
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Template Sequence  VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. . . KSSIPVFGVDAL
Template Known Secondary structure  TT


TT
TSTTGGG

SSTT...
TTS

SB

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   162.......170.........180.........190.........200.........210.........220...... ...230........
 
   251........260.........270 .........280.........290. ........300.........
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Query Sequence  PDIYKAMMDGEANASVELTP. NMAGPAFDALEKYKKDGTMPE. . . . . . . . KLTLTKSTLYLPDTAKEE
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Template Sequence  PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF
Template Known Secondary structure  TSS
B

TTS
TTTTS



BTT



TTTGGG
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   239240.........250.........260.........270.........280.........290.........300......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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