Job Description P39325 Confidence 95.87% Date Thu Jan 5 11:59:21 GMT 2012 Rank 97 Aligned Residues 219 % Identity 15% Template d1ewka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.																	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.									.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Query Sequence		A	P	L	T	V	G	F	S	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	.	.	.	.	.	.	.	.	G	I	T	L	.	.	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Template Conservation
Template Sequence		G	D	V	I	I	G	A	L	F	S	V	H	H	Q	P	P	A	E	K	V	P	E	R	K	C	G	E	I	R	E	Q	Y	G	I	Q	R	V	E	A	M	F	H	T	L	D	K	I	N	A	D	P	V	L	L	P	N	I	T	L	G	S	E	I	R	D	S	C	W	H	S	S	V	A	L	E	Q	S	I	E	F
Template Known Secondary structure			S									S	B					T	T	T	G	G	G	T					B		T	T	T	T																		S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	.	.	.	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V
Query Conservation																																											.	.	.
Alig confidence										.																																	.	.	.
Template Conservation										.
Template Sequence		I	R	K	P	I	A	G	V	.	I	G	P	G	S	S	S	V	A	I	Q	V	Q	N	L	L	Q	L	F	D	I	P	Q	I	A	Y	S	A	T	S	I	D	L	S	D	K	T	L	Y	K	Y	F	L	R	V	V	P	S	D	T	L	Q	A	R	A	M	L	D	I	V	K	R	Y	N	W	T	Y	V	S	A	V
Template Known Secondary structure										.				S	S												G	G	G	T						S	S				G	G	G	G		T	T	T		T	T				S	S																	T	T
Template Predicted Secondary structure										.
Template SS confidence
		123	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K
Query Conservation
Alig confidence		.	.	.	.	.																																																									.
Template Conservation		.	.	.	.	.																																																									.
Template Sequence		.	.	.	.	.	H	T	E	G	N	Y	G	E	S	G	M	D	A	F	K	E	L	A	A	Q	E	G	L	C	I	A	H	S	D	K	I	Y	S	N	A	G	E	K	S	F	D	R	L	L	R	K	L	R	E	R	L	P	K	A	R	V	.	V	V	C	F	C	E	G	M	T	V	R	G	L	L	S	A	M	R
Template Known Secondary structure		.	.	.	.	.			S	S																		T											T	T															T	T	T	T	T				.
Template Predicted Secondary structure		.	.	.	.	.																																																									.
Template SS confidence
							231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		R	L	G	V	V	.	.	G	E	F	S	L	I	G	S	D	G
Template Known Secondary structure				T			.	.	S								T	T
Template Predicted Secondary structure							.	.
Template SS confidence
		305	.	.	.	.			310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions