Job Description P39325 Confidence 98.24% Date Thu Jan 5 11:59:21 GMT 2012 Rank 76 Aligned Residues 225 % Identity 15% Template c3t0nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 Resolution 2.22 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																		.	.																			.	.	.	.	.	.	.
Query SS confidence																		.	.																			.	.	.	.	.	.	.
Query Sequence		L	A	A	P	L	T	V	G	F	S	Q	V	G	S	E	S	.	.	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	.	.	.	.	.	.	.	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A
Query Conservation																		.	.																			.	.	.	.	.	.	.
Alig confidence																		.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	D	T	F	K	V	G	L	I	V	P	X	T	G	G	Q	A	S	T	G	K	Q	I	D	N	A	I	K	L	Y	I	K	K	H	G	D	T	V	A	G	K	K	I	E	V	I	L	K	D	D	A	A	I	P	D	N	T	K	R	L	A	Q	E	L	I	V	N	D	K	V	N	V	I	A	G	F	G	I	T
Template Known Secondary structure			T	T										S	S	S	T	T																				S			T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		T	G	W	E	P	V	L	K	E	A	K	D	A	E	I	P	V	F	L	.	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K
Query Conservation																					.
Alig confidence																					.																																													.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		P	A	A	L	A	A	A	P	L	A	T	Q	A	K	V	P	E	I	V	X	A	A	G	T	S	I	I	T	E	R	S	P	Y	I	V	R	T	S	F	T	L	A	Q	S	S	I	I	I	G	D	W	A	A	K	N	G	I	K	K	V	A	T	L	T	.	.	.	.	.	S	D	Y	A	P	G	N	D	A	L	A
Template Known Secondary structure															T						S	S				G	G	G	G	G	G		T	T				S	S																	T	T									.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	A	E	A	I	K	N	A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G
Query Conservation
Alig confidence																												.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		F	F	K	E	R	F	T	A	G	G	G	E	I	V	E	E	I	K	V	P	L	A	N	P	D	F	.	.	.	.	.	A	P	F	L	Q	R	X	K	D	A	K	P	D	A	X	F	V	F	V	P	A	G	Q	G	G	N	F	X	K	Q	F	A	E	R	G	L	D	K	S	G	I	K	V	I	G	P	G	D	V
Template Known Secondary structure										T	T											S	S	S				.	.	.	.	.										S			S								T	T												T	T	G	G	G	T	T							G	G	G
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	D	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	D	D	D	L
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions