Job Description P39325 Confidence 96.93% Date Thu Jan 5 11:59:21 GMT 2012 Rank 96 Aligned Residues 211 % Identity 8% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		A	L	A	A	P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	.	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L
Query Conservation																																							.
Alig confidence																																							.																													.
Template Conservation																																																																				.
Template Sequence		A	M	P	N	N	I	Q	I	G	G	L	F	P	N	Q	Q	S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	.	F	G	F	Y	E	R	R	T	V	N	M	L	T
Template Known Secondary structure					S									S	S	S	S													T			S	S	S											T	T																T		S			.						T	T	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	A	K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N
Query Conservation
Alig confidence																																	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		S	F	C	G	A	L	H	V	C	F	I	T	P	S	F	P	V	D	T	S	N	Q	F	V	L	Q	L	R	P	E	L	.	.	.	.	.	Q	E	A	L	I	S	I	I	D	H	Y	K	W	Q	T	F	V	Y	I	.	.	.	.	.	.	Y	D	A	D	R	G	L	S	V	L	Q	R	V	L	D	T	A	A	E
Template Known Secondary structure								T							S				S	S			T	T					S				.	.	.	.	.												T								.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		K	N	W	Q	V	T	A	V	N	I	L	T	T	T	E	E	G	Y	.	.	.	.	.	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V	D	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E	K	N	G	I	G	Y	H	Y	I	L	A
Template Known Secondary structure			T								T	T	T							.	.	.	.	.										S	S	S																						T	T		S	S	T	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions