Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 25 Aligned Residues 265 % Identity 17% Template c3rotA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila Resolution 1.91 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	.	.	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A
Query Conservation																																							.	.
Alig confidence																																							.	.
Template Conservation
Template Sequence		R	D	K	Y	Y	L	I	T	H	G	S	Q	D	P	Y	W	T	S	L	F	Q	G	A	K	K	A	A	E	E	L	K	V	D	L	Q	I	L	A	P	P	G	A	N	D	V	P	K	Q	V	Q	F	I	E	S	A	L	A	T	Y	P	S	G	I	A	T	T	I	P	S	D	T	A	F	S	K	S	L	Q	R	A
Template Known Secondary structure										S				S																		T									S	S	S																T			S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		N	K	L	N	I	P	V	I	A	V	D	T	R	P	K	D	K	T	K	N	P	Y	L	V	F	L	G	S	D	N	L	L	A	G	K	K	L	G	E	K	A	L	E	L	T	P	S	A	K	.	R	A	L	V	L	N	P	Q	P	G	H	I	G	L	E	K	R	A	Y	G	I	K	T	I	L	Q	D	K	G	I
Template Known Secondary structure					T							S				S		T	T	T	S			S																							T	T			.							S		T	T																		T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	.	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D
Query Conservation																																																									.
Alig confidence			.	.																									.	.	.																										.
Template Conservation			.	.																									.	.	.
Template Sequence		F	.	.	F	E	E	L	D	V	G	T	D	P	N	Q	V	Q	S	R	V	K	S	Y	F	K	I	H	.	.	.	P	E	T	N	I	I	F	C	L	T	S	Q	A	L	D	P	L	G	Q	X	L	L	H	P	D	R	Y	D	F	N	Y	Q	P	Q	V	Y	S	F	D	K	T	P	N	T	V	S	L	I	H	K
Template Known Secondary structure			.	.								S																	.	.	.	T	T							S	S													S					T																						T
Template Predicted Secondary structure			.	.																									.	.	.
Template SS confidence
		181			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		G	E	A	N	A	S	V	E	L	T	P	.	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		K	L	V	N	Y	V	X	D	Q	Q	P	F	L	X	G	Y	L	S	I	T	Q	L	V	L	X	N	R	Y	Q	L	N	P	V	N	I
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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