Job Description P39325 Confidence 98.36% Date Thu Jan 5 11:59:21 GMT 2012 Rank 73 Aligned Residues 226 % Identity 17% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.			.																	.	.	.	.	.	.	.
Query SS confidence																		.	.			.																	.	.	.	.	.	.	.
Query Sequence		L	A	A	P	L	T	V	G	F	S	Q	V	G	S	E	S	.	.	G	W	.	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	.	.	.	.	.	.	.	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V
Query Conservation																		.	.			.																	.	.	.	.	.	.	.
Alig confidence																		.	.			.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	S	V	K	I	G	F	I	T	D	X	S	G	L	Y	A	D	I	D	G	Q	G	G	L	E	A	I	K	X	A	V	A	D	F	G	G	K	V	N	G	K	P	I	E	V	V	Y	A	D	H	Q	N	K	A	D	I	A	A	S	K	A	R	E	W	X	D	R	G	G	L	D	L	L	V	G	G	T	N
Template Known Secondary structure				S	S									S	S	S	T	T	T	T	T	S																T	S			T	T											T	T																S									S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		A	T	G	W	E	P	V	L	K	E	A	K	D	A	E	I	P	V	F	L	L	D	R	.	.	.	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D
Query Conservation																									.	.	.
Alig confidence																									.	.	.																																									.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		S	A	T	A	L	S	X	N	Q	V	A	A	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V	H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	T	W	F	F	L	.	.	.	.	.	T	A	D	Y	A	F	G	K	A
Template Known Secondary structure																T							S				G	G	G	G	T	T	T			T	T					S																	T	T								.	.	.	.	.			S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S
Query Conservation
Alig confidence																															.	.	.	.	.																																						.	.
Template Conservation																															.	.	.	.	.																																						.	.
Template Sequence		L	E	K	N	T	A	D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	.	.	.	.	.	S	S	F	L	L	Q	A	Q	S	S	K	A	Q	I	L	G	L	A	N	A	G	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	.	.	K	T	X	K	L	A	A
Template Known Secondary structure													T	T											T	T		S			.	.	.	.	.										T			S																					T	T	G	G	.	.	G	T
Template Predicted Secondary structure																															.	.	.	.	.																																						.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.
		247	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	V	P	D	I	Y	K	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	X	F	I	N	D	V	H	A	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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