Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 10 Aligned Residues 288 % Identity 17% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	.	V	V	A	T	G	W	E	P	V	L	K	E	A	K
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		T	S	V	V	F	L	N	P	G	N	S	T	E	T	F	W	V	S	Y	S	Q	F	X	Q	A	A	A	R	D	L	G	L	D	L	R	I	L	Y	A	E	R	D	P	Q	N	T	L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V	A	P	Q	I	L	R	L	S	Q
Template Known Secondary structure										S		T	T																			T									T	T															S	S	S			S								S	S										T
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	.	.	.	.	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N
Query Conservation																																																			.	.	.	.
Alig confidence																.	.																																		.	.	.	.
Template Conservation																.	.
Template Sequence		G	S	G	I	K	L	F	I	V	N	S	P	L	T	.	.	L	D	Q	R	W	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P	A	G	H	G	I	E	L	L	A	F	S	G	L	K	V	T	P	A	A	Q	L	R	E	R	G	L	R	R	A	L	A	E
Template Known Secondary structure		T	S									S				.	.	T	T	T																														S	S										S		T	T	S
Template Predicted Secondary structure																.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		H	P	Q	V	H	L	R	Q	L	V	Y	G	E	W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	.	.	.	P	K	T	Q	L	V	W	S	A	N	D	E	X	A	L	G	A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S	S	P	E	A	L	Q	A	L
Template Known Secondary structure			T	T										T	T																	.	.	.	T	T							S	S														T	T			B	T	T	T	B						S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		M	D	G	E	A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	.	.	.	.	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A	K	E	E	L	E	K	K	K	N
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		I	D	G	K	L	S	V	L	E	A	G	H	F	T	L	G	G	W	A	L	V	A	L	H	D	D	A	L	G	L	D	A	R	R	L	G	G	P	D	W	Q	L	S	L	F	Q	A	L	T	P	A	Q	A	R	Q	L	L	R	L	G	D	Q
Template Known Secondary structure				T	S	S							G	G	G														T	T			S	T	T	T	T		S																						G	G	G
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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