Job Description P39325 Confidence 97.10% Date Thu Jan 5 11:59:21 GMT 2012 Rank 93 Aligned Residues 214 % Identity 13% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																			.	.	.	.	.	.	.	.	.												.
Query SS confidence																		.	.																			.	.	.	.	.	.	.	.	.												.
Query Sequence		L	A	A	P	L	T	V	G	F	S	Q	V	G	S	E	S	.	.	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	.	.	.	.	.	.	.	.	.	I	T	L	K	I	A	D	G	Q	Q	K	.	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P
Query Conservation																		.	.																			.	.	.	.	.	.	.	.	.												.
Alig confidence																		.	.																			.	.	.	.	.	.	.	.	.												.
Template Conservation
Template Sequence		S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I	A	G
Template Known Secondary structure			S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S					S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		V	V	A	T	G	W	E	P	V	L	K	E	A	K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	.	.	.	.	.	.	.	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	.	.	.	.	.	V	N	G	K	P	C	N	V	V	E	L
Query Conservation																														.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I
Template Known Secondary structure				S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G
Query Conservation
Alig confidence		.	.																																						.	.	.	.
Template Conservation		.	.																																						.	.	.	.
Template Sequence		.	.	T	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	.	.	.	.	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P
Template Known Secondary structure		.	.			S	S														G	G	G	G	T											S	S		S		.	.	.	.											S			S																				T	T	S
Template Predicted Secondary structure		.	.																																						.	.	.	.
Template SS confidence
				199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		236	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	S	L
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions