Job Description P39325 Confidence 99.97% Date Thu Jan 5 11:59:21 GMT 2012 Rank 62 Aligned Residues 243 % Identity 17% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K	D
Query Conservation
Alig confidence																																																.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	I	A	V	L	I	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	D	S	L	T	S	Q	A	G	T	.	D	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I	A	Q	D	I	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		T	T	S	G	G	G												G	G	G	T								S	S	S	S		S	S	S	.								T	T			S							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	F	T	V	P	D	S	L	P	D	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	L	G	H	T	H	I	A	H	L	.	.	.	.	.	R	V	G	S	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A	H	G	L	E	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S				B																								T	T			S					.	.	.	.	.			S	S																	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template SS confidence
														130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G	E	A
Query Conservation
Alig confidence																										.	.	.																																											.	.
Template Conservation																										.	.	.																																											.	.
Template Sequence		L	S	N	D	Y	L	G	P	A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	.	.	.	H	P	E	V	T	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	.	.	L	A	Q	T	R	L	I	N	L
Template Known Secondary structure								S																		.	.	.		T	T							S	S															T			T	T	T	T							S				.	.				S	T	T	T
Template Predicted Secondary structure																										.	.	.																																											.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A
Query Conservation
Alig confidence																												.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		T	T	I	D	D	N	S	I	G	V	G	Y	N	A	A	L	L	L	L	S	X	L	E	I	X	H	.	.	.	.	.	.	T	L	Q	P	S	L	I	E	R	G	T	C
Template Known Secondary structure																											S	.	.	.	.	.	.										S	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions