Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 42 Aligned Residues 269 % Identity 15% Template c3g85A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum Resolution 1.84 Å

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		23	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		P	L	T	V	G	F	S	Q	V	.	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K
Query Conservation											.
Alig confidence											.																																																													.	.
Template Conservation																																																																								.	.
Template Sequence		K	P	T	I	A	L	Y	W	S	S	D	I	S	V	N	I	I	S	R	F	L	R	G	L	Q	S	K	L	A	K	Q	N	Y	N	Y	N	V	V	I	C	P	Y	K	T	D	C	L	H	L	E	K	G	I	S	K	E	N	S	F	D	A	A	I	I	A	N	I	S	N	Y	.	.	D	L	E	Y	L	N	K	A
Template Known Secondary structure											T	T	S		G	G	G															T	T	T		S									T	T		G	G	G		G	G	G	S	T	T	T			S					S	S					.	.
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I
Query Conservation
Alig confidence																	.	.	.	.	.	.																										.	.	.
Template Conservation																	.	.	.	.	.	.																										.	.	.
Template Sequence		S	L	T	L	P	I	I	L	F	N	R	L	S	N	K	.	.	.	.	.	.	Y	S	S	V	N	V	D	N	Y	K	X	G	E	K	A	S	L	L	F	A	K	K	R	Y	K	.	.	.	S	A	A	A	I	L	T	E	S	L	N	D	A	X	D	N	R	N	K	G	F	I	E	T	C	H	K	N	G	I	K
Template Known Secondary structure				S	S						S				S	S	.	.	.	.	.	.	S																					T	T			.	.	.	B									S	S																	T	T		B
Template Predicted Secondary structure																	.	.	.	.	.	.																										.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G	E
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		I	S	E	N	H	I	I	A	A	E	N	S	I	H	G	G	V	.	.	D	A	A	K	K	L	X	K	L	K	N	T	P	K	A	L	F	C	N	S	D	S	I	A	L	G	V	I	S	V	L	N	K	R	Q	I	S	I	P	D	D	I	E	I	V	A	I	G	X	N	D	R	E	Y	T	E	F	S	T	P	P
Template Known Secondary structure				G	G	G						S	S						.	.							T	T	S	S	S			S					S	S														T	T			T	T	T	T									S							S	S	S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	I	V	D	I	P	I	E	E	X	A	G	T	C	I	S	L	V	E	K	L	I	N	R	D	I	E	N	P	T	S	I	L	F	D	G	P	L	I	L	R	N
Template Known Secondary structure																									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions