Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 17 Aligned Residues 281 % Identity 16% Template c3d02A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Resolution 1.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	.	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		E	K	T	V	V	N	I	S	K	V	D	G	X	P	W	F	N	R	X	G	E	G	V	V	Q	A	G	K	E	F	N	L	N	A	S	Q	V	G	P	S	S	T	D	A	P	Q	Q	V	K	I	I	E	D	L	I	A	R	K	V	D	A	I	T	I	V	P	N	D	A	N	V	L	E	P	V	F	K	K	A	R
Template Known Secondary structure										S		S	S																		T	T									S	S	S															T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I
Query Conservation
Alig confidence														.	.	.																																		.
Template Conservation														.	.	.																																		.
Template Sequence		D	A	G	I	V	V	L	T	N	E	S	P	.	.	.	G	Q	P	S	A	N	W	D	V	E	I	I	D	N	E	K	F	A	A	E	Y	V	E	H	X	A	K	R	X	G	G	K	G	.	G	Y	V	I	Y	V	G	S	L	T	V	P	Q	H	N	L	W	A	D	L	L	V	K	Y	Q	K	E	H	Y	P	D
Template Known Secondary structure			T	T							S		T	.	.	.	T		T	T		S					S	S																	T	T	T			.							S		S	S																				T	T
Template Predicted Secondary structure														.	.	.																																		.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G	E
Query Conservation
Alig confidence																.																																										.	.
Template Conservation																.																																										.	.
Template Sequence		X	H	E	V	T	R	R	X	P	V	A	E	S	V	.	D	D	S	R	R	T	T	L	D	L	X	K	T	Y	P	D	L	K	A	V	V	S	F	G	S	N	G	P	I	G	A	G	R	A	V	K	E	K	R	A	K	.	.	N	K	V	A	V	Y	G	X	X	I	P	S	Q	A	A	S	L	I	K	S	G	D
Template Known Secondary structure					S	S	S		B	S		T	T			.															T	T							S	S	T	T												T	T		T	.	.	T	T																			T	S
Template Predicted Secondary structure																.																																										.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		262	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	A	S	V	E	L	T	P	N	.	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	K	S	T	L	Y	L	P	D	T	A	K	E	E	L
Query Conservation												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	E	G	I	T	Y	D	P	A	T	A	G	Y	A	L	A	A	V	A	S	T	L	L	N	G	K	T	I	E	P	G	F	E	L	K	E	L	G	K	A	E	V	D	S	D	K	H	I	I	R	F	H	K	V	L	L	V	N	K	D	N	I	D	S	L	Y
Template Known Secondary structure		S																								T	T					T	T				T	T	T							T	T	T	T												T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions