Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 26 Aligned Residues 273 % Identity 14% Template c3bblA_ PDB info PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans Resolution 2.35 Å

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		23	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		P	L	T	V	G	F	S	Q	V	.	.	.	.	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																																																													.	.
Template Conservation																																																																											.	.
Template Sequence		S	F	X	I	G	Y	S	W	T	Q	T	E	P	G	Q	V	N	H	I	L	D	Q	F	L	S	S	X	V	R	E	A	G	A	V	N	Y	F	V	L	P	F	P	F	S	E	D	R	S	Q	I	D	I	Y	R	D	L	I	R	S	G	N	V	D	G	F	V	L	S	S	I	N	Y	N	.	.	D	P	R	V	Q
Template Known Secondary structure														T	T		S			T															T	T										S	S	T	T											T	T			S						S			T	T	.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A
Query Conservation
Alig confidence																	.	.	.	.																															.	.	.
Template Conservation																	.	.	.	.																															.	.	.
Template Sequence		F	L	L	K	Q	K	F	P	F	V	A	F	G	R	S	.	.	.	.	N	P	D	W	D	F	A	W	V	D	I	D	G	T	A	G	T	R	Q	A	V	E	Y	L	I	G	R	G	H	R	.	.	.	R	I	A	I	L	A	W	P	E	D	S	R	V	G	N	D	R	L	Q	G	Y	L	E	A	X	Q	T	A
Template Known Secondary structure						T	T							S			.	.	.	.	S	T	T																									T			.	.	.									T	T																		T
Template Predicted Secondary structure																	.	.	.	.																															.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence		Q	L	P	I	E	T	G	Y	I	L	R	G	E	G	T	F	E	V	G	R	A	X	T	L	H	L	L	D	L	S	P	E	R	R	P	T	A	I	X	T	L	N	D	T	X	A	I	G	A	X	A	A	A	R	E	R	G	L	T	I	G	T	D	L	A	I	I	G	F	D	D	A	P	.	.	X	V	Q	Y	L
Template Known Secondary structure		T					G	G	G						S	S													T	S		T	T	T	S		S					S	S														T	T			B	T	T	T	B						S			T	.	.	T	G	G	G	S
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	E	A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	P	L	S	S	V	R	Q	P	I	A	E	A	G	R	K	C	I	E	L	L	V	A	I	V	E	G	R	E	P	E	Q	K	H	I	L	L	Q	P	S	L	I	I	R	A	S	E
Template Known Secondary structure		S	S																									T	T				S													B		S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions