 |
Job Description | P39325 | Confidence | 63.60% | Date | Thu Jan 5 11:59:21 GMT 2012 |
Rank | 143 | Aligned Residues | 86 |
% Identity | 15% | Template | c2w7tA_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:putative cytidine triphosphate synthase; |
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
|
Resolution | 2.10 Å |
|
 |
  |   |
23 | . | . | . | . | . | . | 30 | . | . | |
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
. | 90 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . | . |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
P | L | T | V | G | F | S | Q | V | G | . |
. |
. |
S | E | S | G | W | R | A | A | E | T | N | V | A | K | S | E | A | E | K | R | G | I | T | L | K | I | A | D | G | Q | Q | K | Q | . |
. |
E | N | Q | I | K | A | V | R | S | F | V | A | Q | G | V | D | A | I | F | I | A | P | V | . |
. |
. |
. |
V | A | T | G | W |
Query Conservation |   |
  |   |   |
|
|
|
|   |   |   | . | . | . |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   | . | . |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   | . | . | . | . |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|
|
|
|   |   |   |   |   |
|
|
|   | . |
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   | . |   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
T | V | R | I | A | F | V | G | K | Y | L | Q | D | A | G | D | T | Y | F | . |
S | V | L | Q | C | F | E | H | C | Q | I | A | L | Q | V | R | L | D | I | L | Y | V | D | S | E | E | L | E | G | P | N | A | D | E | A | R | K | A | L | L | G | . |
C | D | G | I | F | V | P | G | G | F | G | N | R | G | V | D | G | K |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
|
|  |  |  |  | T | T | T | T |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  | G | G | G | G | S | S | T | T | T |  |  |  |  |  |  |  |  | T | . |
| S |  |  |  |  |
|
|
|
| T | T | T | T |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
324 | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | |
. | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | |
. | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . |
  |
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | V | L | K | E | A | K | D | A | E | I | P | V | F | L | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |
|   |   |   |
|
|
|
|
|
Template Sequence |   |
C | A | A | A | Q | V | A | R | M | N | N | I | P | Y | F | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
402 | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|