Job Description P39325 Confidence 100.00% Date Thu Jan 5 11:59:21 GMT 2012 Rank 32 Aligned Residues 272 % Identity 17% Template c2o20H_ PDB info PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis Resolution 1.90 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	P	L	T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A
Query Conservation
Alig confidence																																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		K	R	T	T	T	V	G	V	I	L	P	T	I	T	S	T	Y	F	A	A	I	T	R	G	V	D	D	I	A	S	M	Y	K	Y	N	M	I	L	A	N	S	D	N	D	V	E	K	E	E	K	V	L	E	T	F	L	S	K	Q	V	D	G	I	V	Y	M	G	S	S	L	D	.	.	E	K	I	R	T	S	L
Template Known Secondary structure												S		T	T																		T	T									T	T															T	T		S						S	S				.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N
Query Conservation
Alig confidence															.	.	.	.																															.	.	.
Template Conservation															.	.	.	.																															.	.	.
Template Sequence		K	N	S	R	T	P	V	V	L	V	G	T	I	.	.	.	.	D	G	D	K	E	I	P	S	V	N	I	D	Y	H	L	A	A	Y	Q	S	T	K	K	L	I	D	S	G	N	K	.	.	.	K	I	A	Y	I	M	G	S	L	K	D	V	E	N	T	E	R	M	V	G	Y	Q	E	A	L	L	E	A	N	I
Template Known Secondary structure					T							S			.	.	.	.		S	S	S		S																					T	T		S	.	.	.	S						S		T	T	S																	T	T
Template Predicted Secondary structure															.	.	.	.																															.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G
Query Conservation
Alig confidence																												.	.	.	.																																										.	.
Template Conservation																												.	.	.	.																																										.	.
Template Sequence		E	F	D	E	N	L	V	F	E	G	N	Y	S	Y	E	Q	G	K	A	L	A	E	R	L	L	E	.	.	.	.	R	G	A	T	S	A	V	V	S	H	D	T	V	A	V	G	L	L	S	A	M	M	D	K	G	V	K	V	P	E	D	F	E	I	I	S	G	A	N	S	P	.	.	I	T	Q	Y	T	Y	P
Template Known Secondary structure					G	G	G				S			S						T	T							.	.	.	.	T	T		S					S	S															T			T	T	T	T						S	S			G	.	.	G	G	G	G		S	S
Template Predicted Secondary structure																												.	.	.	.																																										.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	T	S	V	N	Q	P	L	Y	D	L	G	A	V	A	M	R	L	L	T	K	L	M	L	K	E	D	V	E	Q	N	Q	L	V	L	D	H	E	I	F	S	R	R	S	T	K
Template Known Secondary structure																										T	T				S														T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions