Job Description P39325 Confidence 99.90% Date Thu Jan 5 11:59:21 GMT 2012 Rank 67 Aligned Residues 266 % Identity 11% Template c2hqbA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	F	S	Q	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K	D	A	E
Query Conservation
Alig confidence									.	.																																																																						.
Template Conservation									.	.																																																																						.
Template Sequence		X	V	G	L	L	V	E	.	.	D	T	G	W	N	R	K	A	Y	E	G	L	L	N	I	H	S	N	L	D	V	D	V	V	L	E	E	G	V	N	S	E	Q	K	A	H	R	R	I	K	E	L	V	D	G	G	V	N	L	I	F	G	H	G	H	A	F	A	E	Y	F	S	T	I	H	N	Q	Y	P	.	D
Template Known Secondary structure									.	.					T														S												S														T	T								S	T								T	T	T	T	S		T	.	T
Template Predicted Secondary structure									.	.																																																																						.
Template SS confidence
		1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	N	I	K	I	I
Query Conservation
Alig confidence															.	.	.	.																																							.	.	.	.	.	.
Template Conservation															.	.	.	.																																							.	.	.	.	.	.
Template Sequence		V	H	F	V	S	F	N	G	E	V	K	G	E	.	.	.	.	N	I	T	S	L	H	F	E	G	Y	A	X	G	Y	F	G	G	X	V	A	A	S	X	S	E	T	H	K	V	G	V	I	A	A	F	P	W	Q	.	.	.	.	.	.	P	E	V	E	G	F	V	D	G	A	K	Y	X	N	E	S	E	A	F
Template Known Secondary structure		S						S					S	S	.	.	.	.	S																						T		S	S	S							S		T	T		.	.	.	.	.	.													T	T
Template Predicted Secondary structure															.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G	E	A	N	A
Query Conservation
Alig confidence																						.	.	.	.																														.	.	.	.	.	.									.	.
Template Conservation																						.	.	.	.																														.	.	.	.	.	.									.	.
Template Sequence		V	R	Y	V	G	E	W	T	D	A	D	K	A	L	E	L	F	Q	E	L	.	.	.	.	Q	K	E	Q	V	D	V	F	Y	P	A	G	D	G	Y	H	V	P	V	V	E	A	I	K	D	Q	G	D	F	.	.	.	.	.	.	A	I	G	Y	V	G	D	Q	.	.	A	D	L	G	G	S	T	I	L	T	S
Template Known Secondary structure						S	S	S	S													.	.	.	.		T	T	T									T	T	T												T			.	.	.	.	.	.						S			.	.	S	S	S	S		S	S
Template Predicted Secondary structure																						.	.	.	.																														.	.	.	.	.	.									.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	.	.	.	.	.	.	.	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A	K	E	E	L	E	K	K	K	N
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	Q	H	V	D	D	L	Y	V	L	V	A	K	R	F	Q	E	G	K	L	E	S	G	N	L	Y	Y	D	F	Q	D	G	V	V	S	L	G	E	F	S	S	V	V	P	D	E	V	R	E	Q	I	T	D	A	I	S	T
Template Known Secondary structure																	T	T	T	T											G	G	G	T	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions