Job Description P29680 Confidence 29.89% Date Thu Jan 5 11:45:39 GMT 2012 Rank 254 Aligned Residues 178 % Identity 16% Template d1wdda1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.35

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		V	T	C	K	A	D	V	D	K	L	P	I	P	D	P	E	D	E	L	G	Y	V	M	N	A	V	R	T	I	R	R	E	L	K	G	E	V	P	L	I	G	F	S	G	.	S	P	W	T	L	A	T	Y	M	V	E	G	G	S	S	K	A	F	T	V	I	K	K	M	M	Y	A	D	P	Q	A	L	H	A	L
Query Conservation																																														.
Alig confidence							.																																							.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	D	E	N	.	V	N	S	Q	P	F	M	R	W	R	D	R	F	V	F	C	A	E	A	I	Y	K	S	Q	A	E	T	G	E	I	K	G	H	Y	L	N	A	T	A	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	.		S	S	B	T	T	B																					S	S			B								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	L	A	K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	Q	W	L	E	A	M	A	E
Query Conservation
Alig confidence		.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation		.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Sequence		.	.	.	.	C	E	E	M	I	K	R	A	V	F	A	R	E	L	G	V	P	I	V	M	H	D	Y	L	T	G	G	F	T	A	N	T	S	L	A	H	Y	C	R	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	L	H	I	H	R	A	.	.	.	.	M	H	A	V	I	D	R
Template Known Secondary structure		.	.	.	.															T		S																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								T	.	.	.	.	T						S
Template Predicted Secondary structure		.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template SS confidence
						247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																.	.	290	.	.	.	.	.	.					.	.	.	300	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	C	D	A	L	G	L	D	W	T	T	D	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	G	H	G	E	G	H	V	F	N	L	G
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.		.																			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.		.																			.
Template Sequence		Q	K	N	H	G	M	H	F	R	.	.	V	.	L	A	K	A	L	R	M	S	G	G	D	H	I	H	A	G	T	V	.	V	G	K	L	E	G	E	R	E	M	T	L	G	F	V	D	L	L	R	D	D	F	I	E	K	D	R	A	R	G	I	F	F	T	Q	D	W	V	S	M	P	G	V	I	P	V	A	S
Template Known Secondary structure			S	S	S	S					.	.		.											S							S	.	S	S	S	S																	S					B	G	G	G	T	B		S					T	T
Template Predicted Secondary structure											.	.		.																			.
Template SS confidence
		304	.	.	.	.	.	310	.	.			.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	I	H	Q	D	V	P	P	E	H	A	G	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	I	H	V	W	H	M	P	A	L	T	E	I	F
Template Known Secondary structure		S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions