Job Description P29680 Confidence 32.00% Date Thu Jan 5 11:45:39 GMT 2012 Rank 250 Aligned Residues 141 % Identity 9% Template c3ivuB_ PDB info PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og Resolution 2.72 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	Q	W	L	E	A	M	A	E	T	G	C	D
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		T	E	K	K	I	Q	I	A	K	A	L	D	N	F	G	V	D	Y	I	E	L	T	S	P	.	.	.	.	.	.	.	.	.	.	.	.	V	A	S	E	Q	S	R	Q	D	C	E	A	I	C	K	L	G	L	.	.	K	C	K	I	L	T	H	I	R	C	H	M	D	D	A	R	V	A	V	E	T	G	V	D
Template Known Secondary structure																T		S							G	.	.	.	.	.	.	.	.	.	.	.	.	G	G													T	S			.	.	S	S								S											T	T		S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.													.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		266	.	.	.	270	.	.	.	.																				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	G	L	D	W	T	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	G	F	G	H	G	E	G	H	V	F	N	L	G
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.							.	.																					.	.	.	.
Template Conservation																																												.							.	.																					.	.	.	.
Template Sequence		G	V	D	V	V	I	G	T	S	Q	Y	L	R	K	Y	S	H	D	M	T	Y	I	I	D	S	A	T	E	V	I	N	F	V	K	S	K	G	I	E	V	R	F	.	S	S	E	D	S	F	.	.	R	S	D	L	V	D	L	L	S	L	Y	K	A	V	D	K	I	G	V	N	.	.	.	.	R	V	G	I	A
Template Known Secondary structure									G	G	G																										T	T						.			T	T	G	G	.	.	G	S																		S	.	.	.	.
Template Predicted Secondary structure																																												.							.	.																					.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	I	H	Q	D	V	P	P	E	H	A	G	V	F	V	E	A	V	H	R	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		D	T	V	G	C	A	T	P	R	Q	.	V	Y	D	L	I	R	T	L	R	G	V
Template Known Secondary structure			S	S	S							.
Template Predicted Secondary structure												.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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