 |
Job Description | P29680 | Confidence | 35.05% | Date | Thu Jan 5 11:45:39 GMT 2012 |
Rank | 233 | Aligned Residues | 62 |
% Identity | 26% | Template | c3gnnA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; |
PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei
|
Resolution | 2.25 Å |
|
 |
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | |
. | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | Y | L | N | A | Q | I | K | A | G | A | Q | A | V | M | I | F | D | T | W | G | G | V | L | T | G | R | D | Y | Q | Q | F | S | L | Y | Y | M | H | K | I | V | D | G | L | L | R | E | N | D | G | R | R | V | P | V | T | L | F | T | K | G | G | G | . |
Q | W | L | E | A | M | A | E | T | G | C | D | A | L | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |
|   |
|   |   |   |   |   |
|
|
|   |   |
|   |
|
|   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   | . |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|   |   |   |
|
|
|   |
|   |
|
|
| . | . | . | . | . |   |
|   |
| . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |
| . | . | . | . | . | . |   |
|
|
|
|
|
|
|   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |
|
|
Template Sequence |   |
L | D | Q | L | R | T | A | L | A | H | G | A | R | S | V | L | L | D | N | . |
. |
. |
. |
. |
F | T | L | D | . |
. |
. |
. |
. |
. |
. |
. |
M | M | R | D | A | V | R | V | T | E | G | R | A | . |
. |
. |
. |
. |
. |
V | L | E | V | S | G | G | V | N | F | D | T | V | R | A | I | A | E | T | G | V | D | R | I | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | . | . | . | . | . |
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T | S |  | . | . | . | . | . | . |  |  |  |  |  | S | S |
| S | T | T | T |  |  |  |  |  |  | T | T |
| S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . |
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | |
|
|
|
|
. | . | . | . | |
|
|
|
|
|
|
|
. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
  |
  |   |
269 | 270 |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
L | D |
Query Conservation |   |
  |
|
Alig confidence |   |
|
|
Template Conservation |   |
|
|
Template Sequence |   |
I | G |
Template Known Secondary structure |   |
| G |
Template Predicted Secondary structure |   |
 |
|
Template SS confidence |   |
|
|
  |   |
276 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|