Job Description P29680 Confidence 86.45% Date Thu Jan 5 11:45:39 GMT 2012 Rank 77 Aligned Residues 194 % Identity 17% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	P	I	P	D	P	E	D	E	L	G	Y	V	M	N	A	V	R	T	I	R	R	E	L	K	G	E	V	P	L	I	G	F	S	G	S	P	W	T	L	A	T	Y	M	V	E	G	G	S	S	K	A	F	T	V	I	K	K	M	M	Y	A	D	P	Q	A	L	H	A	L	L	D	K	L	A	K	S	V
Query Conservation
Alig confidence																																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	L	R	K	H	G	L	E	D	K	L	D	P	I	V	R	N	A	V	R	I	A	R	R	A	A	G	E	K	L	V	F	G	D	I	G	P	T	.	.	.	.	G	E	L	P	Y	P	L	G	S	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	F	Y	E	N	F
Template Known Secondary structure					G	G	G	T		G	G	G																	T	T	S										.	.	.	.	S			B	T	T	T	S	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120																			.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.
Query Sequence		T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	Q	W	L	.	.	.	.	.	.	.	.	.	E	A	M	A
Query Conservation																																																																					.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.													.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		R	E	T	V	E	I	M	V	E	E	G	V	D	G	I	I	.	.	.	.	F	E	T	F	S	D	I	L	E	L	K	A	.	.	.	.	.	.	.	.	A	V	L	A	A	R	E	V	S	R	D	V	F	L	I	A	H	M	T	F	D	E	K	G	R	S	L	T	G	T	D	P	A	N	F	A	I	T	F	D
Template Known Secondary structure												T		S				.	.	.	.													.	.	.	.	.	.	.	.										S	S	S										T	T	S			T	T	S
Template Predicted Secondary structure																		.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		E	T	G	C	D	A	L	G	L	D	W	T	T	D	.	.	.	.	.	.	.	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	G	F	G	H	G	E	G	H	V	F	N	L	G	H	G	I	H	Q	D	V
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																				.	.	.																						.	.	.	.				.				.	.	.
Template Conservation																																										.	.	.																						.	.	.	.				.				.	.	.
Template Sequence		E	L	D	I	D	A	L	G	I	N	C	S	L	G	P	E	E	I	L	P	I	F	Q	E	L	S	Q	Y	T	D	K	F	L	V	V	E	P	N	A	G	.	.	.	Y	P	L	K	P	H	D	F	A	V	H	I	D	S	Y	Y	E	L	G	V	N	.	.	.	.	I	F	G	.	G	C	C	.	.	.	G	T
Template Known Secondary structure		T	S	S		S						S	S	S														T	T			S										.	.	.										T	T						T	T	T		S	.	.	.	.				.			T	.	.	.	T
Template Predicted Secondary structure																																										.	.	.																						.	.	.	.				.				.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260		.	.	.				.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	E	H	A	G	V	F	V	E	A	V	H	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	E	H	V	K	L	F	R	K	V	L	G	N	R
Template Known Secondary structure															S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions