Job Description P29680 Confidence 47.16% Date Thu Jan 5 11:45:39 GMT 2012 Rank 184 Aligned Residues 141 % Identity 18% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.												.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	Y	V	M	N	A	V	R	T	I	R	R	E	L	K	G	E	V	P	L	I	G	F	S	G	S	P	.	.	.	.	.	.	W	T	L	A	T	Y	M	V	E	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	K	A	F	T	V	I	K	K	M	M	Y	A	D	P	Q	A	L	H	A	L	L	D
Query Conservation																														.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.													.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		A	A	Y	W	C	Q	S	V	T	E	L	K	A	D	F	.	P	D	N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R
Template Known Secondary structure																	.	T	T	S										S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure																	.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.		.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
		184	.	.	.																.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																								.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	G	R	D	Y	Q	Q	F	S	L	Y
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	N	V	T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R
Template Known Secondary structure								S	S								S		S	S													T		S														B		T	T	S		B	S	S		B	T	T	T	T	B								S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	.	.	G	G	Q	W	L	E	A	M	A	E	T	G	C	D	A	L	G	L
Query Conservation																												.	.
Alig confidence															.	.	.	.	.	.	.							.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		A	V	T	T	I	A	R	A	L	P	G	F	P	.	.	.	.	.	.	.	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V
Template Known Secondary structure										S	T	T			.	.	.	.	.	.	.					S	S			S										T	T		S
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		777	.	.	780	.	.	.	.	.	.	.	.	.								790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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