Job Description P29680 Confidence 25.95% Date Thu Jan 5 11:45:39 GMT 2012 Rank 270 Aligned Residues 175 % Identity 9% Template c1gehE_ PDB info PDB header:lyase Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase; PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase) Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	C	K	A	D	V	D	K	L	P	I	P	D	P	E	D	E	L	G	Y	V	M	N	A	V	R	T	I	R	R	E	L	K	G	E	V	P	L	I	G	F	S	G	S	P	W	T	L	A	T	Y	M	V	E	G	G	S	S	K	A	F	T	V	I	K	K	M	M	Y	A	D	P	Q	A	L	H	A	L	L
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	D	D	E	N	L	T	S	P	W	Y	N	R	F	E	E	R	A	E	I	M	A	K	I	I	D	K	V	E	N	E	T	G	E	K	K	T	W	F	A	N	I	T	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T					T	T	S																				T		S							B			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	A	K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	Q	W	L	E	A	M	A	E	T
Query Conservation
Alig confidence		.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		.	.	.	L	L	E	M	E	Q	R	L	E	V	L	A	D	L	G	L	K	H	A	M	V	D	V	V	I	T	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	L	R	Y	I	R	D	L	A	A	D	Y	G	L	A	I	H	G	H	R	A	.	.	.	.	M	H	A	A	F	T	R	N
Template Known Secondary structure		.	.	.															T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T								T	.	.	.	.	T	T					S
Template Predicted Secondary structure		.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
					234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	D	A	L	G	L	D	W	T	T	D	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	G	H	G	E	G	H	V	F	N	L	G	H
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.			.																				.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.			.																				.	.	.	.	.
Template Sequence		P	Y	H	G	I	S	M	.	.	F	V	.	L	A	K	L	Y	R	L	I	G	I	D	Q	L	H	V	G	T	A	E	.	.	.	.	.	G	G	K	W	D	V	I	Q	N	A	R	I	L	R	E	S	H	Y	K	P	D	E	N	D	V	F	H	L	E	Q	K	F	Y	S	I	K	A	A	F	P	T	S	S	G
Template Known Secondary structure		T	T	S					.	.			.									T		S									.	.	.	.	.	T															S						T	T			S							T	T										S
Template Predicted Secondary structure									.	.			.																				.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.			.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	H	Q	D	V	P	P	E	H	A	G	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	H	P	G	N	I	Q	P	V	I	E	A	L
Template Known Secondary structure		S			T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions