Phyre 2 alignment of P75823 with d1bw0a

Job Description P75823
Confidence 99.96% Date Thu Jan 5 12:14:38 GMT 2012

Rank 90 Aligned Residues 324

% Identity 15% Template d1bw0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.						.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.															.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	I	D	L	.	.	.	.	.	R	S	D	T	V	T	R	P	S	R	A	M	L	E	A	M	M	A	.	.	A	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	K	E	A	A	I	F	L	P	T	G	T
Query Conservation					.	.	.	.	.																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	I	K	L	S	V	G	D	P	T	L	D	K	N	L	L	T	S	A	A	Q	I	K	K	L	K	E	A	I	D	S	Q	E	C	N	G	Y	F	P	T	V	G	S	P	E	A	R	E	A	V	A	T	W	W	R	N	S	F	V	H	K	E	E	L	K	S	T	I	V	K	D	N	V	V	L	C	S	G	G	S
Template Known Secondary structure									T	T	T	T	S		S																T	T		S	S	S				T	T																				S	T	T	T	G	G	G			G	G	G					S
Template Predicted Secondary structure
Template SS confidence
	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence	Q	A	N	L	V	A	L	L	S	H	C	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	.	.	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N
Query Conservation																																																			.	.
Alig confidence																												.	.	.																					.	.															.	.	.	.
Template Conservation																												.	.	.																																					.	.	.	.
Template Sequence	H	G	I	L	M	A	I	T	A	I	C	D	A	G	D	Y	A	L	V	P	Q	P	G	F	P	H	Y	.	.	.	E	T	V	C	K	A	Y	G	I	G	M	H	F	Y	N	C	R	P	E	N	D	W	E	A	D	L	D	E	I	R	R	L	K	D	D	K	.	.	.	.	T	K	L	L	I	V	T	N	P	S
Template Known Secondary structure													T	T								S			T			.	.	.							T	T										G	G	G	T	T													T	T	.	.	.	.								S	S
Template Predicted Secondary structure																												.	.	.																																					.	.	.	.
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.

	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																																.	.	.	.
Query SS confidence																																									.	.	.	.	.																																.	.	.	.
Query Sequence	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	.	.	.	.	.	G	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	.	.	.	.
Query Conservation																																									.	.	.	.	.																																.	.	.	.
Alig confidence																																									.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence	N	P	C	G	S	N	F	S	R	K	H	V	E	D	I	V	R	L	A	E	E	L	R	L	P	L	F	S	D	E	I	Y	A	G	M	V	F	K	G	K	D	P	N	A	T	F	T	S	V	A	D	F	E	T	T	V	P	R	V	I	L	G	G	T	A	N	L	V	V	P	G	W	R	L	G	W	L	L	Y	V
Template Known Secondary structure	T	T	T																				T								T	T	T	T		B			S	S		T	T						T	T	S	S			S													S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

					209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.		.	.	.	.	.	280
Predicted Secondary structure	.	.	.	.																																	.	.																											.									.
Query SS confidence	.	.	.	.																																	.	.																											.									.
Query Sequence	.	.	.	.	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	.	.	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	.	G	A	D	V	M	R	Q	D	.	T	N	M	L	F	V
Query Conservation	.	.	.	.																																	.	.																											.									.
Alig confidence	.	.	.	.																																	.	.																											.									.
Template Conservation
Template Sequence	D	P	H	G	N	G	P	S	F	L	E	G	L	K	R	V	G	M	L	V	C	G	P	C	T	V	V	Q	A	A	L	G	E	A	L	L	N	T	P	Q	E	H	L	D	Q	I	V	A	K	I	E	E	S	A	M	Y	L	Y	N	H	I	G	E	C	I	G	L	A	P	T	M	P	R	G	A	M	Y	L	M	S
Template Known Secondary structure		T	T		S																T		S														S	S																								T	T	S	T	T								B	T	T
Template Predicted Secondary structure
Template SS confidence
	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

	281	.	.	.	.								.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence	R	V	G	E	E	.	.	.	.	.	.	.	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A	R
Query Conservation						.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																				.	.	.	.	.	.									.	.
Template Conservation																																														.	.
Template Sequence	R	I	D	L	E	K	Y	R	D	I	K	T	D	V	E	F	F	E	K	L	L	E	E	E	N	V	Q	V	L	P	G	T	I	F	H	A	P	G	F	T	R	L	T	T	T	.	.	R	P	V	E	V	Y	R	E	A	V	E	R	I	K	A	F	C	Q	R
Template Known Secondary structure				G	G	G	B	S	S			S																			G	G	G	G	T		T	T								.	.	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
	349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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