Job Description P75823 Confidence 99.95% Date Thu Jan 5 12:14:38 GMT 2012 Rank 127 Aligned Residues 318 % Identity 17% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.														.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		M	I	D	L	R	S	D	T	V	T	R	P	S	R	A	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	.	.	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation						.	.	.
Template Sequence		K	L	D	L	.	.	.	T	R	G	K	P	S	S	E	Q	L	D	F	A	D	E	L	L	A	L	P	G	K	G	D	F	K	A	A	D	G	T	D	V	R	N	Y	G	G	L	D	G	I	V	D	I	R	Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D
Template Known Secondary structure						.	.	.												T	T	G	G	G	G	G		S		T	T			B		T	T	S		B	T	T	S	S			S	S														T	S		G	G	G					S	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		34	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		66	.	.															.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	C	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.																					.														.	.	.	.
Template Conservation																																					.	.	.																					.														.	.	.	.
Template Sequence		V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	.	.	.	F	S	I	T	E	R	F	G	F	E	X	I	S	V	P	X	N	E	D	G	.	P	D	X	D	A	V	E	E	L	V	K	N	P	.	.	.	.	Q	V	K	G
Template Known Secondary structure												T	T		S	S		G	G	G	S	S									S						.	.	.							T	T										T	T		.										T	T	S	T	.	.	.	.	T
Template Predicted Secondary structure																																					.	.	.																					.														.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.
		132	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																		.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																		.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	L	E	N	.	.	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	.	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	.	.	.	.	.	.	.	.	.	.	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G
Query Conservation								.	.																		.																															.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																		.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L
Template Known Secondary structure							S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S															T	T		T	T								S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.
Predicted Secondary structure																																														.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	.	.	.	.	.	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	.	.	.	.	.	.	A	G
Query Conservation																																														.	.	.	.	.																								.	.	.	.	.	.
Alig confidence		.																																												.	.	.	.	.																								.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A
Template Known Secondary structure		.	T	T	T	S																							S																S																															G	G	G	T
Template Predicted Secondary structure		.
Template SS confidence
			263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																											.
Template Sequence		Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K	N	L	R	L	A	P	S	.	L	P	P	V	E	E	L	E	V	A	X	D	G	V	A	T	C	V
Template Known Secondary structure							S	B	S	S							S	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S								S	.	S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions