Job Description P75823 Confidence 99.92% Date Thu Jan 5 12:14:38 GMT 2012 Rank 194 Aligned Residues 297 % Identity 12% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	.	.	.	.	.	.	.	.	.	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	C	E	R	G	.	.	.	.	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G
Query Conservation																					.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.																										.	.	.	.														.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	.	.	.	S	A	V	I	S	E	L
Template Known Secondary structure							S																T	T	T					G	G	G					S	S																	G	G	G	S								S			T			.	.	.							T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure															.	.																	.
Query SS confidence															.	.																	.
Query Sequence		S	I	Q	P	Q	P	I	D	A	A	A	D	G	.	.	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	.	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A
Query Conservation															.	.																	.
Alig confidence															.	.																	.
Template Conservation
Template Sequence		D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V
Template Known Secondary structure		T									B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T																				T								T	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		174	.	.	.	.	.												180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																					.										.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																					.										.	.	.	.	.
Query Sequence		V	V	A	Y	G	C	.	.	.	.	.	.	.	.	.	.	.	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	.	G	T	P	V	G	S	L	L	V	.	.	.	.	.	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																					.										.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																					.										.	.	.	.	.
Template Conservation
Template Sequence		Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D
Template Known Secondary structure				T	T													T						T	T									S	S	S	S	T	T			S	S	S									S																S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		237	.	.												240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.															.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	.	.	.	.	.	.	.	.	.	.	.	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	.	G	A	D	V	M	R	Q	D	.	T	N	M	L	F	V	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	N	A	A	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y
Template Known Secondary structure				T					T	T	S	T	T																												T	S	T	T								B	S	S																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.										.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																		.	.
Template Sequence		C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	.	.	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H
Template Known Secondary structure											B					G	G	G	T				T	T			B							.	.	S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions