Job Description P75823 Confidence 99.96% Date Thu Jan 5 12:14:38 GMT 2012 Rank 98 Aligned Residues 330 % Identity 12% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.															.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.
Predicted Secondary structure																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		M	I	D	L	R	S	D	T	V	T	R	P	S	R	.	.	A	M	L	E	A	M	M	A	A	P	V	G	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	.	.	.	.	.	.	.	.	G	K	E	A	A	I	F	L	P
Query Conservation																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	X	L	G	G	G	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	T	N
Template Known Secondary structure						S																									S		T	T		S										S				T	T																							G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																		.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.
Query Sequence		T	G	T	Q	A	N	L	V	A	L	L	S	H	C	E	R	.	.	.	.	.	.	.	.	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	.	.	.	G	S	I	Q	P	Q	P	I	D	A	A	A	D	.	.	.	.	.	G	T	L	P	L	D	K	V	A	M	K	I
Query Conservation																		.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																								.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P
Template Known Secondary structure		S													S																S	S	S	S			G	G	G	T	T			S	S	S																T	T																T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	.	G	L
Query Conservation																																																																															.
Alig confidence							.																																																																								.
Template Conservation							.
Template Sequence		A	L	K	E	G	.	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	G	L
Template Known Secondary structure					T	T	.									S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T
Template Predicted Secondary structure							.
Template SS confidence
		200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.
Query Sequence		G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	.	.	.	.	.	.	.	.	.	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	A	D	V
Query Conservation																																																						.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	L	X	I
Template Known Secondary structure		G	G	G																							T	S	S															T	S									T																				S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		271	.	.	.		.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.																	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure						.										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	Q	D	.	T	N	M	L	F	V	R	V	G	.	.	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L
Query Conservation						.										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																																																.	.
Template Sequence		H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	.	.	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V
Template Known Secondary structure						B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S		S	.	.
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		332	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		437	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions