Job Description P75823 Confidence 99.94% Date Thu Jan 5 12:14:38 GMT 2012 Rank 162 Aligned Residues 332 % Identity 14% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure														.	.	.	.														.	.	.	.																							.	.
Query SS confidence														.	.	.	.														.	.	.	.																							.	.
Query Sequence		M	I	D	L	R	S	D	T	V	T	R	P	.	.	.	.	S	R	A	M	L	E	A	M	M	A	A	P	V	.	.	.	.	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	.	.	G	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	C
Query Conservation														.	.	.	.														.	.	.	.																							.	.
Alig confidence														.	.	.	.														.	.	.	.																							.	.
Template Conservation
Template Sequence		L	I	D	G	P	A	G	M	W	C	A	Q	V	G	Y	G	R	R	E	I	V	D	A	M	A	H	Q	A	M	V	L	P	Y	A	S	P	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	G	D	L	N	R	I	F	F	T	T	G	G	S	T	A	V	D	S	A	L	R	F	S	E
Template Known Secondary structure					T	T					T		T	T		B																					T	T	T															T	T	S	S	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		71										.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																					.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	.	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	L	D	K	V	A	M	K	I	K
Query Conservation			.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	N	N	V	L	G	R	P	Q	K	K	R	I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A	F	L	D	D	L	V	Q	E	F	E	D	R	I	E
Template Known Secondary structure							T	T		T	T								T	T					S	S						T				G	G	G		T	T	S					T	T									G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																																								.
Query SS confidence																								.																																								.
Query Sequence		P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	.	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	.	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L
Query Conservation																								.																																								.
Alig confidence																								.																																								.
Template Conservation
Template Sequence		S	L	G	P	D	T	I	A	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G	V	V	P	D	I	I	T	F	A	K	G	V	T	S
Template Known Secondary structure					G	G	G								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S						T	T					S						G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																																																.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.																																																.	.	.	.
Query Sequence		G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	.	.	.	.	.	.	.	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	.	.	.	.	G	A
Query Conservation																						.	.	.	.	.	.	.																																																.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																																																.	.	.	.
Template Conservation
Template Sequence		G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	M	E	R	E	G	I	V	D	Q	A	R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	G	V
Template Known Secondary structure		T	S	S														T	T	S	G	G	G		T	T								T	T	T	T																		T	T																		T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																				.	.	.	.	.	.																		.
Query SS confidence																				.	.	.	.	.	.																		.
Query Sequence		D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	E	E	N	.	.	.	.	.	.	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	.	S	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A
Query Conservation																				.	.	.	.	.	.																		.
Alig confidence																				.	.	.	.	.	.																		.
Template Conservation
Template Sequence		A	E	T	R	S	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	R	P	L	G	D	L	C	V	I	S	P	P	L	I	I	S	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T
Template Known Secondary structure								T	T																											T	T							T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions