Phyre 2 alignment of P75823 with c3fdbA

Job Description P75823
Confidence 99.96% Date Thu Jan 5 12:14:38 GMT 2012

Rank 124 Aligned Residues 321

% Identity 18% Template c3fdbA_

PDB info PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution

Resolution 1.99 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.									.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure											.																																							.	.	.	.	.	.	.	.
Query SS confidence											.																																							.	.	.	.	.	.	.	.
Query Sequence	M	I	D	L	R	S	D	T	V	T	.	R	P	S	R	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	.	.	.	.	.	.	.	.	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	C	E
Query Conservation											.																																							.	.	.	.	.	.	.	.
Alig confidence											.																	.																						.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence	V	L	P	L	W	V	A	E	S	D	F	S	T	C	P	A	V	L	Q	A	I	T	D	A	V	Q	R	.	E	A	F	G	Y	Q	P	D	G	S	L	L	S	Q	A	T	A	E	F	Y	A	D	R	Y	G	Y	Q	A	R	P	E	W	I	F	P	I	P	D	V	V	R	G	L	Y	I	A	I	D	H	F	T	P
Template Known Secondary structure	S					S	S				S																T	.	T			S	S			S	S																					G	G	G					S														S
Template Predicted Secondary structure																												.
Template SS confidence
	24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L	K	E
Query Conservation
Alig confidence																.	.	.																				.	.														.	.	.	.
Template Conservation																.	.	.																				.	.														.	.	.	.
Template Sequence	A	Q	S	K	V	I	V	P	T	P	A	Y	P	P	F	.	.	.	F	H	L	L	S	A	T	Q	R	E	G	I	F	I	D	A	T	G	G	.	.	I	N	L	H	D	V	E	K	G	F	Q	A	G	.	.	.	.	A	R	S	I	L	L	C	N	P	Y	N	P	L	G	X	V	F	A	P	E	W	L	N	E
Template Known Secondary structure	T	T								S			T			.	.	.								T									T	T	S	.	.												T	T	.	.	.	.								S	S	B	T	T	T	T	B
Template Predicted Secondary structure																.	.	.																				.	.														.	.	.	.
Template SS confidence
	103	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																								.	.	.
Query SS confidence																																			.	.																								.	.	.
Query Sequence	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	.	.	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	.	.	.	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G	G
Query Conservation																																			.	.																								.	.	.
Alig confidence																																			.	.																								.	.	.
Template Conservation
Template Sequence	L	C	D	L	A	H	R	Y	D	A	R	V	L	V	D	E	I	H	A	P	L	V	F	D	G	Q	H	T	V	A	A	G	V	S	D	T	A	A	S	V	C	I	T	I	T	A	P	S	A	W	N	I	A	G	L	K	C	A	Q	I	I	F	S	N	P	S	D	A	E	H	W	Q	Q	L	S	P	V	I	K	D
Template Known Secondary structure								T	T								T	T	G	G	G	B	S	S	S					G	G	G	S																				G	G	G									S										S
Template Predicted Secondary structure
Template SS confidence
	174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																							.	.													.						.	.
Query SS confidence																			.	.																							.	.													.						.	.
Query Sequence	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	.	.	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	.	.	G	A	D	V	M	R	Q	D	T	N	M	L	.	F	V	R	V	G	.	.	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V
Query Conservation																			.	.																							.	.													.						.	.
Alig confidence																			.	.																							.	.													.						.	.
Template Conservation
Template Sequence	G	A	S	T	L	G	L	I	A	A	E	A	A	Y	R	Y	G	T	D	F	L	N	Q	E	V	A	Y	L	K	N	N	H	D	F	L	L	H	E	I	P	K	R	I	P	G	A	K	I	T	P	X	Q	A	T	Y	L	X	W	I	D	F	R	D	T	T	I	E	G	S	P	S	E	F	F	I	E	K	A	K	V
Template Known Secondary structure																																											S	T	T							S	B		S							T	T	S				S
Template Predicted Secondary structure
Template SS confidence
	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

	300	.	.	.	.									.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.
Query Sequence	L	I	N	A	S	.	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A	R
Query Conservation						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.									.	.
Template Conservation																						.	.
Template Sequence	A	X	N	D	G	A	W	F	G	E	D	G	T	G	F	C	R	L	N	F	A	.	.	T	S	R	E	V	L	E	E	A	I	D	R	X	A	K	A	V	S	H
Template Known Secondary structure					G	G	G	G		G	G	G	T	T								.	.	S																	T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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