Job Description P75823 Confidence 99.94% Date Thu Jan 5 12:14:38 GMT 2012 Rank 172 Aligned Residues 332 % Identity 12% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.														.	.	.	.	.																							.	.
Query SS confidence														.	.	.	.														.	.	.	.	.																							.	.
Query Sequence		M	I	D	L	R	S	D	T	V	T	R	P	.	.	.	.	S	R	A	M	L	E	A	M	M	A	A	P	V	.	.	.	.	.	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	.	.	G	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H
Query Conservation														.	.	.	.														.	.	.	.	.																							.	.
Alig confidence														.	.	.	.														.	.	.	.	.																							.	.
Template Conservation
Template Sequence		L	L	D	A	F	A	G	L	Y	C	V	N	V	G	Y	G	R	Q	E	I	A	E	A	I	A	D	Q	A	R	E	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I
Template Known Secondary structure					T	T					T			S		B																	S						T	T																	S		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		70										.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.														.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	.	.	.	.	.	.	.	.	.	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	.	.	.	.	.	.	.	.	.	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	K	V	A	M
Query Conservation			.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A
Template Known Secondary structure								T	T		T	T								T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	.	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I	A	K	G	L
Template Known Secondary structure								G	G	G								S	S	B	S	T	T	T		B				T	T													T								T	T	T	S	S	S	T	T	S	S	S							T				S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																																													.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.																																													.	.	.	.	.
Query Sequence		G	L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	.	.	.	.	.	.	.	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	.	.	.	.	.	R	E
Query Conservation																								.	.	.	.	.	.	.																																													.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																													.	.	.	.	.
Template Conservation
Template Sequence		T	S	A	Y	A	P	L	S	G	S	I	V	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W	T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A	E	A	L	S	Q	H
Template Known Secondary structure		T	T	T	S	S																								S		S				T	T	T	T																		T	T																					T	T	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.													.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		A	G	A	D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	E	E	N	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	.	.	.	.	A	S	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	X	P	Q	G	D	I	L	G	F	A	P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R
Template Known Secondary structure		T	T							S	S	S								S	B	T	T	T	T	B				G	G	G																						S	S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		451	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions