Phyre 2 alignment of P75823 with c3f9tB

Job Description P75823
Confidence 99.96% Date Thu Jan 5 12:14:38 GMT 2012

Rank 105 Aligned Residues 314

% Identity 16% Template c3f9tB_

PDB info PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution

Resolution 2.11 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																												.											.	.	.	.											.	.																				.	.	.	.	.	.	.
Query SS confidence																												.											.	.	.	.											.	.																				.	.	.	.	.	.	.
Query Sequence	S	D	T	V	T	R	P	S	R	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	.	D	P	T	V	N	A	L	Q	D	Y	.	.	.	.	A	A	E	L	S	G	K	E	A	A	.	.	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	C	E	.	.	.	.	.	.	.
Query Conservation																												.											.	.	.	.											.	.																				.	.	.	.	.	.	.
Alig confidence																												.											.	.	.	.											.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	S	X	C	S	N	V	L	P	I	T	R	K	I	V	D	I	F	L	E	T	N	L	G	D	P	G	L	F	K	G	T	K	L	L	E	E	K	A	V	A	L	L	G	S	L	L	N	N	K	D	A	Y	G	H	I	V	S	G	G	T	E	A	N	L	X	A	L	R	C	I	K	N	I	W	R	E	K	R	R
Template Known Secondary structure	S		S						T										T	T			T	T	S	G	G	G																			T	T		T	T							S
Template Predicted Secondary structure
Template SS confidence
	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

							72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P
Query Conservation	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																.	.	.																																			.	.	.	.	.	.
Template Conservation																						.	.	.																																			.	.	.	.	.	.
Template Sequence	K	G	L	S	K	N	E	H	P	K	I	I	V	P	I	T	A	H	F	S	F	.	.	.	E	K	G	R	E	X	X	D	L	E	Y	I	Y	A	P	I	K	E	D	Y	T	I	D	E	K	F	V	K	D	A	V	E	D	Y	.	.	.	.	.	.	D	V	D	G	I	I	G	I	A	G	T	T	E	L	G	T
Template Known Secondary structure	T	T					S	S							T	T			T			.	.	.								T								B		T	T	S	S	B												S	.	.	.	.	.	.									B	S		T	T	T
Template Predicted Secondary structure																						.	.	.																																			.	.	.	.	.	.
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.																	.
Query SS confidence																																										.	.	.	.	.	.	.	.																	.
Query Sequence	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	Q	.	.	.	.	.	.	.	.	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	.	V	G	S	L	L	V	G	N	R	D	Y	I	K	R
Query Conservation																																										.	.	.	.	.	.	.	.																	.
Alig confidence																																										.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence	I	D	N	I	E	E	L	S	K	I	A	K	E	N	N	I	Y	I	H	V	D	A	A	F	G	G	L	V	I	P	F	L	D	D	K	Y	K	K	K	G	V	N	Y	K	F	D	F	S	L	G	V	D	S	I	T	I	D	P	H	K	X	G	H	C	P	I	P	S	G	G	I	L	F	K	D	I	G	Y	K	R
Template Known Secondary structure	B														T								T	T	G	G	G	T	G	G	G			G	G	G			T	T						S	G	G	G	T		S						T	T	T	T	T				S	S							S	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

	217	.	.	220	.	.	.	.	.	.	.	.	.													230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence	A	I	R	W	R	K	M	T	G	G	G	M	R	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	A	D	.	V	M	R	Q	D	T	N	M	L	F	V	R	V	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence	Y	L	D	V	D	A	P	Y	L	T	E	T	R	Q	A	T	I	L	G	T	R	V	G	F	G	G	A	C	T	Y	A	V	L	R	Y	L	G	R	E	G	Q	R	K	I	V	N	E	C	X	E	N	T	L	Y	L	Y	K	K	L	K	E	N	N	F	K	P	V	I	E	P	I	L	N	I	V	A	I	E	D	E
Template Known Secondary structure	G	T					T	T	S	S	S	S				S	S		S	S			S																																							T	T			B	S	S			S	S	S							T
Template Predicted Secondary structure
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F
Query Conservation																						.	.	.
Alig confidence		.	.																			.	.	.
Template Conservation		.	.
Template Sequence	D	.	.	Y	K	E	V	C	K	K	L	R	D	R	G	I	Y	V	S	V	C	N	C	V	K	A	L	R	I	V	V	X	P	H	I	K	R	E	H	I	D	N	F	I	E	I	L	N	S	I
Template Known Secondary structure	T	.	.											T	T		B					S	S	S	S								T	T
Template Predicted Secondary structure		.	.
Template SS confidence
	346			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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