Job Description P75823 Confidence 99.89% Date Thu Jan 5 12:14:38 GMT 2012 Rank 220 Aligned Residues 312 % Identity 10% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.												.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query Sequence		R	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	.	.	.	.	.	.	.	.	.	.	.	S	G	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	.	.	.	.	.	C	E	R	G	E	E	Y	I
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		D	K	V	V	A	E	W	V	N	G	A	V	A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A
Template Known Secondary structure														T		S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	.	.	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	F
Query Conservation																																		.	.
Alig confidence																			.															.	.															.	.	.	.
Template Conservation																			.																															.	.	.	.
Template Sequence		I	N	E	P	I	F	T	P	Y	L	R	I	P	E	L	K	D	.	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	.	.	.	.	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A
Template Known Secondary structure				S	S							T	S	G	G	G	G	G	.	S											T	T	T	T	S											S		T	T	.	.	.	.								S	S		T	T	T		B
Template Predicted Secondary structure																			.																															.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		156	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure						.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	E	R	.	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		V	E	K	N	P	K	L	X	I	I	S	D	E	V	Y	G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	Y	N	T	X	L	V	Y	S	Y	S	L	.	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y
Template Known Secondary structure						T	T								T	T	G	G	G	S	T	T								S	G	G	G										.		S		G	G	G									S	S									T	S
Template Predicted Secondary structure																																											.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
																			215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240													.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	A
Template Known Secondary structure			T	T		S		G	G	G												T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																		.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.								.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.	.	.	.	.
Query Sequence		A	G	A	D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	.	N	V	L	I	N	A	S	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.	.	.	.	.								.
Template Conservation																																																																									.
Template Sequence		P	K	D	E	T	D	T	N	T	H	Y	Y	S	L	I	D	I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	A	K	P	G	E	L	R	V	S	Q	.	A	N	L	P	T	E	D	Y
Template Known Secondary structure						S	T	T	B			S																																							T	T	S	S	S		T	T					S	S	T	T						S	.	S	S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.	510
		321	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	V	A	A	H	W	R	A	F	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	I	G	K	Q	V	L	E	L	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions