Phyre 2 alignment of P75823 with c3ezsB

Job Description P75823
Confidence 99.96% Date Thu Jan 5 12:14:38 GMT 2012

Rank 113 Aligned Residues 320

% Identity 9% Template c3ezsB_

PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution

Resolution 2.19 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.									.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																			.	.	.	.	.	.	.	.																						.	.
Query SS confidence															.																																			.	.	.	.	.	.	.	.																						.	.
Query Sequence	M	I	D	L	R	S	D	T	V	T	R	P	S	R	.	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	.	.	.	.	.	.	.	.	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	.	.
Query Conservation															.																																			.	.	.	.	.	.	.	.																						.	.
Alig confidence															.																																			.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	F
Template Known Secondary structure			B					S			S												T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
	24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.

	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L
Query Conservation
Alig confidence																		.	.	.																																			.	.	.	.	.
Template Conservation																		.	.	.																																			.	.	.	.	.
Template Sequence	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	.	.	.	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	E	V	.	.	.	.	.	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L
Template Known Secondary structure	T		S	S								S			T			.	.	.							T	T										G	G	G	T	T													.	.	.	.	.	S						S	S		T	T	T
Template Predicted Secondary structure																		.	.	.																																			.	.	.	.	.
Template SS confidence
	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.
Query Sequence	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	.	.	.	.	.	.	.	.	.	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	W
Query Conservation																																		.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F
Template Known Secondary structure										T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	A	D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L
Query Conservation
Alig confidence																																																.	.																.
Template Conservation																																																.	.																.
Template Sequence	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	.	.	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I
Template Known Secondary structure																							S																					S	T	T		.	.				S	B	S	S							S		.															B
Template Predicted Secondary structure																																																.	.																.
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

	301	.	.	.											.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.
Query Sequence	I	N	A	S	.	.	.	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A	R
Query Conservation					.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																							.	.
Template Sequence	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	V	.	.	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure				G	G	G	G		S	T	T	T	T	T	T								.	.	S																		T
Template Predicted Secondary structure																							.	.
Template SS confidence
	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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