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Job DescriptionP75823
Confidence99.96%DateThu Jan 5 12:14:38 GMT 2012
Rank121Aligned Residues306
% Identity21%Templatec3aemD_
PDB info PDB header:lyaseChain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30. ........40.........50.........60.........70.........80
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Query Sequence  DLRSDTVTRPSRAMLEAMMAAPVGDDVYG. . DDPTVNALQDYAAELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQ
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Template Sequence  IFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGD
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SB


SSTT
SS

SBTTT

T
SSSTTT

TT
S
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   1526...1530.........1540.........1550.........1560.........1570.........1580.........1590.........1600.....
 
   81........ 90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  AAHNYLFEA. GGAAVLGSIQPQPIDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRER
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Template Sequence  TLYGCTVSLFTHWLPRFGIEVDLIDTS. . . . . DVEKVKAAWKPN. . . . TKMVYLESPANPTCKVSD. . . IKGIAVVCHER
Template Known Secondary structure  S

TT

TT.....S

TT....SS
TTT




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   1606...1610.........1620.........1630.. .......1640.... .....1650.........1660.. .......1670...
 
   160.........170.........180.........190.........200... ......210.........220.........230.....
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Query Sequence  NLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPV. . . . GSLLVGNRDYIKRAIRWRKMTGGGMRQSGILA
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Template Sequence  GARLVVDATFT. . . . . . SPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAG. . SLMAPMDA
Template Known Secondary structure  T

TTT......
TTT

GGGGT
STTTTTT
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   1674.....1680.... .....1690.........1700.........1710.........1720.........1730....... ..1740.....
 
   236...240.........250.........260.........270. ........280.... .....290.....
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Query Sequence  AAGIYALKNNVARLQEDHDNAAWMAEQLREAGADVM. . . . . . . . . . . . . . . . . . . RQDTNMLFVRVGE. ENAAALGEYMK
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Template Sequence  FLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLK
Template Known Secondary structure  TTT
TT
TTSTTSTT
SS

SSSTS
S
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   1746...1750.........1760.........1770.........1780.........1790.........1800.........1810.........1820.....
 
   296...300..... ....310.........320........
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Query Sequence  ARNVLINASP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . IVRLVTHLDVSREQLAEVAAHWR
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Template Sequence  VCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE
Template Known Secondary structure  SS
S



SS

TTTTTTTTS
T

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   1826...1830.........1840.........1850.........1860.........1870.........1880.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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