Phyre 2 alignment of P75823 with c2o0rA

Job Description P75823
Confidence 99.97% Date Thu Jan 5 12:14:38 GMT 2012

Rank 45 Aligned Residues 326

% Identity 15% Template c2o0rA_

PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.														.																										.	.	.	.	.	.	.	.	.
Query SS confidence											.														.																										.	.	.	.	.	.	.	.	.
Query Sequence	M	I	D	L	R	S	D	T	V	T	.	R	P	S	R	A	M	L	E	A	M	M	A	A	.	P	V	G	D	D	V	Y	G	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	.	.	.	.	.	.	.	.	.	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H
Query Conservation											.														.																										.	.	.	.	.	.	.	.	.
Alig confidence											.														.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	V	N	L	G	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L
Template Known Secondary structure				S	S		S	S		S	S																T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K	V	L	P	R	E	Y	L
Query Conservation
Alig confidence																																																							.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A	V	T	P	R	.	.	.	.	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L
Template Known Secondary structure			T	T								S			T	T								T	T												T	T															T	T	.	.	.	.								S	S		T	T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	.	.	.	.	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A	I	R	W	R	K	M	T	G
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	K	Q	Y	L	S
Template Known Secondary structure										T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S		T	T	T																							T
Template Predicted Secondary structure
Template SS confidence
	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.		.
Predicted Secondary structure																					.	.																														.											.	.	.														.
Query SS confidence																					.	.																														.											.	.	.														.
Query Sequence	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	.	.	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	A	D	V	M	R	Q	D	.	T	N	M	L	F	V	R	V	G	E	.	.	.	E	N	A	A	A	L	G	E	Y	M	K	A	R	.	N
Query Conservation																					.	.																														.											.	.	.														.
Alig confidence																					.	.																														.											.	.	.														.
Template Conservation
Template Sequence	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A	V	H	D	S	Y	G	T	Y	F	L	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G
Template Known Secondary structure	S				T	T																																						T								B	S	S							G	G	G	T																S
Template Predicted Secondary structure
Template SS confidence
	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

	299	300	.	.	.	.	.												.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	L	I	N	A	S	P	.	.	.	.	.	.	.	.	.	.	.	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																										.	.
Template Sequence	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	.	.	K	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L	A	E
Template Known Secondary structure						G	G	G	G	S						G	G	G								.	.	S													G	G	G	G
Template Predicted Secondary structure																										.	.
Template SS confidence
	343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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