Job Description P75823 Confidence 99.94% Date Thu Jan 5 12:14:38 GMT 2012 Rank 166 Aligned Residues 323 % Identity 17% Template c2hdyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase Resolution 2.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.										.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																	.	.																					.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																	.	.																					.	.	.
Query Sequence		L	R	S	D	T	V	T	R	P	S	R	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	D	D	.	.	.	.	.	.	.	.	.	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	G	K	.	.	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V	A	L	L	S	H	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.																	.	.																					.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																	.	.																					.	.	.
Template Conservation
Template Sequence		M	D	Y	N	A	T	T	P	L	E	P	E	V	I	Q	A	M	T	K	A	M	W	E	A	W	G	N	P	S	S	P	Y	S	A	G	R	K	A	K	D	I	I	N	A	A	R	E	S	L	A	K	M	I	G	G	K	P	Q	D	I	I	F	T	S	G	G	T	E	S	N	N	L	V	I	H	S	V	V	K	H
Template Known Secondary structure			B	T	T	T																			S		S		T	T		S	S																						T			G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.																			.																			.
Query SS confidence		.	.	.	.	.																			.																			.
Query Sequence		.	.	.	.	.	C	E	R	G	E	E	Y	I	V	G	Q	A	A	H	N	Y	L	F	.	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	.	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E	N	T	H	N	G	K
Query Conservation		.	.	.	.	.																			.																			.
Alig confidence		.	.	.	.	.																			.																			.																		.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		F	H	A	N	Q	T	G	A	K	P	H	F	I	T	S	S	V	E	H	D	S	I	R	L	P	L	E	H	L	V	E	E	Q	V	A	A	V	T	F	V	P	V	S	K	V	S	G	Q	T	E	V	D	D	I	L	A	A	V	R	P	.	.	.	.	.	.	.	T	T	R	L	V	T	I	M	L	A	N	N	E
Template Known Secondary structure																	T	T															T	T	S										T	T	T	S	S									T			T	.	.	.	.	.	.	.	T								S	B		T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.								.	.	.	.	.	.	180	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		V	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	.	.	.	.	.	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	L	V	G	N	R	D	Y	I	K	R	A
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		T	G	I	V	M	P	V	P	E	I	S	Q	R	I	K	A	L	N	Q	E	R	V	A	A	G	L	P	P	I	L	V	H	T	D	A	A	Q	A	L	G	K	Q	R	V	D	V	E	D	L	G	V	D	F	L	T	I	V	G	H	K	F	Y	G	P	R	I	G	A	L	Y	I	R	G	L	G	E	F	T	P	L
Template Known Secondary structure		T		B	B																				T	T											T	T	T	T	T	T	S										S						G	G	G	T	T	S		S							T	T	B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.											.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	W	R	K	M	T	G	G	.	.	.	.	.	.	.	.	.	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	.	.	.	.	.	.	.	.	.	.	A	D	V	M	R	Q	D	T	N	M	L
Query Conservation											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	P	M	L	F	G	G	G	Q	E	R	N	F	R	P	G	T	E	N	T	P	M	I	A	G	L	G	K	A	A	E	L	V	T	Q	N	C	E	A	Y	E	A	H	M	R	D	V	R	D	Y	L	E	E	R	L	E	A	E	F	G	Q	K	R	I	H	L	N	S	Q	F	P	G	T	Q	R	L	P	N	T	C
Template Known Secondary structure				S			S	S		G	G	G	G	T	S		S																																													G	G	G				S	S			T	T			B		S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																											.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	R	V	G	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	S	I	R	G	P	R	L	Q	G	H	V	V	L	A	Q	C	R	V	L	M	A	S	V	G	A	A	C	H	S	D	H	G	D	Q	P	S	P	V	L	L	S	Y	G	V	P	F	D	V	A	R	N	A	L	R	L	S	V	G	R	S	T	T	R	A	E	V	D	L	V	V	Q	D	L	K	Q	A	V	A
Template Known Secondary structure								T	T											S	S				B	S	S	S	S			S	S		S	S									T	T								T								S	S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		333
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		440

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions