Return to main results Retrieve Phyre Job Id

Job DescriptionP29012
Confidence100.00%DateThu Jan 5 11:45:32 GMT 2012
Rank20Aligned Residues126
% Identity40%Templated1bd0a1
SCOP infoDomain of alpha and beta subunits of F1 ATP synthase-like Alanine racemase C-terminal domain-like Alanine racemase
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   228.230.........240.........250.........260.........270.........280.........290.........300.......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  GLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSMDMLAVD
Query Conservation   
 

  
 
 
  
  
  
  



          

 
 





  
       
 
 
   



 
 

   

Alig confidence 






















































.























Template Conservation   
 

 

 
 
  

 
  
  



    
     

 
 





  
  
 .  


 
   





 

   

Template Sequence  DTWAEFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH. FHVLVDGQKAPIVGRICMDQCMIR
Template Known Secondary structure  S



S
TT
SGGG


SSS

GGGT

GGGGG.
TTS


SS
Template Predicted Secondary structure 

























.









Template SS confidence 















































































   7..10.........20.........30.........40.........50.........60. ........70.........80.....
 
   308.310.........320...... ...330.........340.........350......
Predicted Secondary structure 













....















Query SS confidence 


















. . . .





























Query Sequence  LTPCPQAGIGTPVELWGKE. . . . IKIDDVAAAAGTVGYELMCALALRVPVVTV
Query Conservation 

    
  

 
 
 
  ....      
    

  
    
  

 
  
Alig confidence 


..













....





























Template Conservation 

 .. 
  

 
 
 
       
    
   


 



  
  



 
 
Template Sequence  LPG. . PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFF
Template Known Secondary structure 
SS..


TT
TT
TS
TTS
TTS
Template Predicted Secondary structure 


..



























Template SS confidence 




















































   319320. ........330.........340.........350.........360.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions