Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 6 Aligned Residues 350 % Identity 32% Template c3oo2A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		Y	Y	R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	N	K	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	A	T	L	D	E	A	I	E	L	R	M	H	G	I	T	A	K	I	L	V
Template Known Secondary structure				S	S																					S	T	T	S												T	T												T	T							S	S									T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																				.	.	.																								.
Query SS confidence																																				.	.	.																								.
Query Sequence		L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	.	.	.	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	.	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M
Query Conservation																																				.	.	.																								.
Alig confidence			.																																	.	.	.																								.
Template Conservation			.
Template Sequence		L	.	G	V	L	P	A	K	D	I	D	K	A	I	Q	H	R	V	A	L	T	V	P	S	K	Q	W	L	K	E	A	I	K	N	I	S	G	E	Q	E	K	K	L	W	L	H	I	K	L	D	T	G	M	G	R	L	G	I	K	D	T	K	T	Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	V	F	E
Template Known Secondary structure			.	S				G	G	G							T	T																	T			S	S			S								B			S	S			S	S	B		S												T	T		T	T
Template Predicted Secondary structure			.
Template SS confidence
		85		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																.																	.	.
Query SS confidence																.																	.	.
Query Sequence		T	L	M	S	H	F	A	E	A	E	H	P	D	G	.	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P
Query Conservation																.																	.	.
Alig confidence																.																	.	.
Template Conservation
Template Sequence		G	V	F	T	H	F	A	C	A	D	E	P	G	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S	L	L	M	D	C	Q	F	C	N	A	I	R	P	G	I	S	L	Y	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P
Template Known Secondary structure								S	S	T	T	S	S	S	S															T	S				S																T	T								G	G	G	G	T			S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C
Query Conservation
Alig confidence																									.	.																											.																												.
Template Conservation																									.	.																											.																												.
Template Sequence		S	V	Q	L	I	A	N	V	V	Q	T	K	T	L	Q	A	G	E	S	V	S	Y	G	.	.	Y	T	A	T	D	P	T	T	I	A	L	L	P	I	G	Y	A	D	G	Y	L	R	I	M	Q	G	.	S	F	V	N	V	N	G	H	Q	C	E	V	I	G	R	V	C	M	D	Q	T	I	V	K	V	P	D	.
Template Known Secondary structure																	T	T		B					.	.		B		S	S								S			G	G	G	T			G	G	G	T	T	.						T	T							S				S	S								T	.
Template Predicted Secondary structure																									.	.																											.																												.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation																	.	.	.	.
Alig confidence		.															.	.	.	.
Template Conservation		.
Template Sequence		.	Q	V	K	A	G	D	S	V	I	L	I	D	N	H	R	E	S	P	Q	S	V	E	V	V	A	E	K	Q	H	T	I	N	Y	E	V	L	C	N	L	S	R	R	L	P	R	I	Y	H
Template Known Secondary structure		.	T			T	T								S		S	S	S	T	T	S								T	T	S											T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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