Job Description P29012 Confidence 99.72% Date Thu Jan 5 11:45:32 GMT 2012 Rank 52 Aligned Residues 203 % Identity 13% Template c3n2oA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.											.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.							.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.																							.	.					.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.																							.	.					.	.	.	.	.	.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	.	.	.	.	.	.	.	.	.	.	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	.	.	.	.	.	.	G	F	A	L	L	N	L	E	E	A	I
Query Conservation																											.	.	.	.	.	.	.	.	.	.																							.	.					.	.	.	.	.	.
Alig confidence				.																							.	.	.	.	.	.	.	.	.	.											.	.	.	.									.	.					.	.	.	.	.	.
Template Conservation				.																																											.	.	.	.
Template Sequence		P	V	.	L	V	R	F	P	Q	I	L	H	Q	R	V	H	S	I	C	D	A	F	N	Q	A	I	E	E	Y	Q	Y	P	N	K	Y	L	L	V	Y	P	I	K	V	N	Q	.	.	.	.	Q	R	E	V	V	D	E	I	L	A	S	Q	A	Q	L	E	T	K	Q	L	G	L	E	A	G	S	K	P	E	L	L
Template Known Secondary structure		S		.																											T		S	S								G	G	G			.	.	.	.															S	T	T									S
Template Predicted Secondary structure				.																																											.	.	.	.
Template SS confidence
		65	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																					.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.
Query SS confidence											.																					.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.
Query Sequence		T	L	R	E	R	G	W	K	G	.	P	I	L	M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	.	.	.	.	.	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	.	.	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	.	.	.	.	.	.	.	.	.
Query Conservation											.																					.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.
Alig confidence											.																					.	.	.	.	.																					.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	L	A	M	A	Q	H	A	S	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	L	G	H	K	V	F	I	V	L	E	K	M	S	E	L	D	L	V	L	R	E	A	K	S	L	G	V	T	P	R	L	G	I	R	I	R	L	A	S	Q	G	A	G	K	W	Q	A	S
Template Known Secondary structure							T	S	S	S								S																T	T									S	T														T									B			S	T	T	S	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
						129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure		.	.	.	.																								.													.
Query SS confidence		.	.	.	.																								.													.
Query Sequence		.	.	.	.	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	.	G	E	M	T	L	M	S	H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H
Query Conservation		.	.	.	.																								.													.
Alig confidence		.	.	.	.																								.													.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	E	K	S	K	F	G	L	S	A	S	Q	V	L	N	V	I	S	R	L	K	K	E	N	Q	L	D	T	L	Q	L	V	H	F	H	L	G	S	Q	M	A	N	I	R	D	V	R	N	G	V	N	E	S	A	R	F	Y	C	E	L	R	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	N
Template Known Secondary structure		S	S							B															T	T		G	G	G										S	S	B																							T	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.														.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		I	T	Y	F	D	V	G	.	.	.	.	G	G	L	A	I	D	Y	D	G	T	R	S	Q	S	S
Template Known Secondary structure									.	.	.	.	S		B				T	T	S				S	S	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions