Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 32 Aligned Residues 285 % Identity 17% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
Predicted Secondary structure																									.	.																									.	.																								.
Query SS confidence																									.	.																									.	.																								.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.	G	P	I	L	M
Query Conservation																									.	.																									.	.																								.
Alig confidence						.																			.	.													.	.	.	.									.	.				.																				.
Template Conservation						.																																	.	.	.	.														.
Template Sequence		P	L	Y	V	.	Y	S	R	A	T	L	E	R	H	W	H	A	F	D	K	S	V	G	D	Y	P	H	L	I	C	Y	A	V	K	A	N	S	.	.	.	.	N	L	G	V	L	N	T	L	A	R	L	G	S	.	G	F	D	I	V	S	V	G	E	L	E	R	V	L	A	A	G	G	D	P	S	K	V	V	F
Template Known Secondary structure		S				.																	T		S	S								G	G	G			.	.	.	.											T	T		.					S	S										T	T			G	G	G
Template Predicted Secondary structure						.																																	.	.	.	.														.
Template SS confidence
		29	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.															.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																				.																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	.	.	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	G	F	Q	P	D	R	V	L	T	V
Query Conservation																				.																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	V	G	K	T	E	A	E	M	K	R	A	L	Q	L	K	I	K	C	F	N	V	E	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S	L	R	I	N	P	D	V	D	A	K	T	H	P	Y	I	S	T	G	L	R	D	N	K	F	G	I	T	F	D	R	A	A	Q	V
Template Known Secondary structure				T	T												T	T		S						S															T									B						T	T	T											S	S		S	B		G	G	G
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	.	A	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q
Query Conservation																							.
Alig confidence																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	L	A	H	S	L	P	N	L	D	V	H	G	I	D	C	H	I	G	S	Q	L	T	A	L	A	P	F	I	D	A	T	D	R	L	L	A	L	I	D	S	L	K	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	H	I	R	H	L	D	V	G	G	G	L	S	E	Y	A	K	A	L	L
Template Known Secondary structure								S	T	T																S																					T	.	.	.	.	.	.	.	.	.	.	.	.	.	T										S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.														.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230												.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	R	D	I	A	N	T	G	L	R	.	.	.	.	.	.	.	.	.	.	.	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D
Query Conservation												.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	R	L	E	R	H	R	D	L	E	L	I	F	E	P	G	R	A	I	A	A	N	A	G	V	L	V	T	K	V	E	F	L	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	H	K	N	F	A	I	I	D	A	A	M	N	D	L	I	W	Q	D	I	I	P	L	R	P	R	Q	G	E
Template Known Secondary structure				G	G	G		T	T	S							S					G	G	G													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S							S			T	T	T									S	S				S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		G	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation														.	.
Alig confidence														.	.									.			.
Template Conservation																								.			.
Template Sequence		A	Q	T	Y	D	L	V	G	P	V	C	E	T	S	D	F	L	G	K	D	R	D	.	L	V	.	L	Q	E	G	D	L	L	A	V	R	S
Template Known Secondary structure										S	S	S		T	T									.			.			T	T						S	S
Template Predicted Secondary structure																								.			.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.		.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions