Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 2 Aligned Residues 349 % Identity 35% Template c3mubB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E
Query Conservation																																																			.
Alig confidence																																																			.																														.
Template Conservation																																																																																	.
Template Sequence		H	R	P	T	K	A	L	I	H	L	G	A	I	R	Q	N	I	Q	Q	M	G	A	H	I	P	Q	G	T	L	K	L	A	V	V	A	N	A	Y	G	H	G	A	V	A	V	A	K	A	I	Q	D	D	V	D	G	F	C	V	S	N	I	D	E	A	I	E	L	R	Q	A	G	L	S	K	P	I	L	I	L	.
Template Known Secondary structure		T	S	S																				T	S		T	T									T	T	T	T	T										G	G	G		S					S	S											T			S						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	S	E	I	E	A	V	A	L	A	K	E	Y	D	F	T	L	T	V	A	G	L	E	W	I	Q	A	L	L	D	K	E	V	D	L	T	G	L	T	V	H	L	I	D	S	G	M	G	R	I	G	F	R	E	A	S	E	V	E	Q	A	Q	D	L	L	Q	Q	H	G	V	C	V	E	G	I	F	T	H	F
Template Known Secondary structure		S				G	G	G								T																	T	T				T	T								S	S	S		S	S	S			S														T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		161	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure									.	.																	.	.	.
Query SS confidence									.	.																	.	.	.
Query Sequence		A	E	A	E	H	P	D	.	.	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L
Query Conservation									.	.																	.	.	.
Alig confidence									.	.																	.	.	.																																											.
Template Conservation																																																																								.
Template Sequence		A	T	A	D	E	E	S	D	D	Y	F	N	A	Q	L	E	R	F	K	T	I	L	A	S	M	K	E	V	P	E	L	V	H	A	S	N	S	A	T	T	L	W	H	V	E	T	I	F	N	A	V	R	M	G	D	A	M	Y	G	L	N	P	S	G	A	V	L	D	L	P	.	Y	D	L	I	P	A	L	T	L
Template Known Secondary structure		S	S	T	T	S	S																				S	S			S														G	G	G			S						T	T	T	T	T			T	T	T	T	S	S			S	.	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C	P	Q	A	G
Query Conservation
Alig confidence																																																		.																												.	.
Template Conservation																																																		.																												.	.
Template Sequence		E	S	A	L	V	H	V	K	T	V	P	A	G	A	C	M	G	Y	G	A	T	Y	Q	A	D	S	E	Q	V	I	A	T	V	P	I	G	Y	A	D	G	W	T	R	D	M	Q	N	F	.	S	V	L	V	D	G	Q	A	C	P	I	V	G	R	V	S	M	D	Q	I	T	I	R	L	P	K	L	.	.	Y	P
Template Known Secondary structure						S							T	T				S	G	G	G					S	S								S			G	G	G	T			G	G	G	T	T		.					T	T					B		S				S	S							S	S		.	.
Template Predicted Secondary structure																																																		.																												.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.
		316	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		L	G	T	K	V	T	L	I	G	S	N	G	D	K	E	I	T	A	T	Q	V	A	T	Y	R	V	T	I	N	Y	E	V	V	C	L	L	S	D	R	I	P	R	E	Y
Template Known Secondary structure		T	T										T	T													T	S								T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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