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Job DescriptionP29012
Confidence100.00%DateThu Jan 5 11:45:32 GMT 2012
Rank27Aligned Residues308
% Identity14%Templatec3llxA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20...... ...30.........40.........50 .........60.........70......
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Query Sequence  MTRPIQASLDLQALKQNLSIVRQAAT. . HARVWSVVKANAYGHGIERIWSAI. . GATDGFALLNLEEAITLRERGWKGPI
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Template Sequence  PDTPY. LLIDEAKLKSNINYLKQRVESLGSHLRPHLT. . . . . LRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT. DL
Template Known Secondary structure  S
SS.TT

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   11.... ....20.........30.........40...... ...50.........60.........70.........80. ..
 
   77..80.........90... ......100.........110.... .....120.........130.........140.........150
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Query Sequence  LMLEGFFHAQDLEIYDQ. . . . HRLTTCVHSNWQLKALQNARL. . KAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMAN
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Template Sequence  LYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHRGGIKPSD. . SKLLTIAKTLG
Template Known Secondary structure 

GGGTT

ST


B
SSSSSS
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   85....90.........100.........110.........120.........130.........140.........150. ........160..
 
   151........160... ......170.........180.... .....190.........200. ........210......
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Query Sequence  VGEMTLMSHFAEA. . . . . . . EHPDGISGAMARIEQAAEGLE. . . . . . CRRSLSNSAATLWHPEA. HFDWVRPGIILYGAS
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Template Sequence  EHFTGLXTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYTTF. .
Template Known Secondary structure  GG


GGGGG

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   163......170.........180.........190.........200.........210.........220.........230.........240
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  PSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTV
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Template Sequence  DLVXKNIGVCDFSHIAXSVVTTVIGHNKEKNWLLTDSGWXALSRDSGTAGQNRDFGYGQVCKIDGSVLDGL. . . . . . . CV
Template Known Secondary structure 
TS

GGG

TTTTS


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   241........250.........260.........270.........280.........290.........300.........310. ..
 
   297..300.........310 .........320......
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Query Sequence  GTVSMDMLAVDLTP. . . CPQAGIGTPVELWGKE
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Template Sequence  NSTSQEHGVIELSDAYQLEDFPVGHQLRIXPNH
Template Known Secondary structure 

SS


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   314.....320.........330.........340......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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