Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 4 Aligned Residues 350 % Identity 25% Template c3kw3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate Resolution 2.04 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L
Query Conservation																																																			.	.
Alig confidence																												.																							.	.
Template Conservation																												.
Template Sequence		P	A	T	A	I	A	T	I	D	V	R	A	I	V	A	N	Y	R	T	L	A	Q	H	V	A	P	.	T	E	C	S	A	V	V	A	N	A	Y	G	L	G	A	H	K	I	A	P	A	L	Y	Q	A	G	C	R	T	F	F	V	A	Q	I	E	E	A	L	Q	L	K	A	V	L	P	E	N	V	M	I	A	L
Template Known Secondary structure				S																						T	T	.	S								T	T	T	T	T												T	T							S	S											S		S	S
Template Predicted Secondary structure																												.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	.	.	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M
Query Conservation																																			.	.
Alig confidence																																			.	.
Template Conservation
Template Sequence		L	N	G	F	P	H	K	A	E	E	F	V	A	Q	S	G	I	I	P	L	L	N	S	W	S	T	I	E	D	W	Q	T	L	C	Q	K	K	N	K	K	F	P	A	I	I	Q	V	D	T	N	M	S	R	L	G	L	D	K	K	E	L	Q	K	L	I	K	N	P	T	I	F	E	K	A	E	I	K	Y	I	L
Template Known Secondary structure		T	T				T	T								T	T							S															T									B		S	S	S		S	S	S	B													T					S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		158	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure												.	.																		.
Query SS confidence												.	.																		.
Query Sequence		S	H	F	A	E	A	E	H	P	D	.	.	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T
Query Conservation												.	.																		.
Alig confidence												.	.																		.																																						.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		S	H	L	A	N	G	E	D	A	S	H	S	S	N	N	K	Q	L	A	A	F	K	R	V	L	A	Q	L	P	T	C	K	V	S	F	A	N	S	G	G	I	F	L	G	S	D	F	Y	F	D	L	V	R	P	G	I	A	L	Y	G	V	D	P	H	G	K	H	.	.	.	.	P	T	P	L	K	A	V	V	K
Template Known Secondary structure					S	S	T	T		S	S		T															T	S														T	S		G	G	G		T	T					S	G	G	G	G	T			T	T			S	.	.	.	.	S		S
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C	P	.	Q
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		V	E	A	Q	V	L	Q	S	R	F	I	D	A	G	I	P	V	G	Y	R	E	S	F	M	T	R	R	P	S	T	L	A	T	I	S	I	G	Y	A	D	G	W	P	R	I	L	S	N	K	G	T	V	Y	F	N	G	H	K	L	P	I	V	G	H	I	S	M	D	S	I	I	V	D	A	T	D	L	D	K	K
Template Known Secondary structure														S	S				S	G	G	G					S	S								S			G	G	G	T			G	G	G	T	T	T						T	T					B		S				S	S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	I	G	T	P	V	E	L	W	G	K	E	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	R	G	D	W	V	E	L	I	G	P	H	Q	P	L	E	K	V	S	T	D	T	N	T	I	P	H	E	I	L	T	S	L	G	K	R	Y	K	R	I	Y	I
Template Known Secondary structure				T	T							B	T	T	B										T	S								T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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