Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 9 Aligned Residues 350 % Identity 29% Template c3hurA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.
Template Conservation
Template Sequence		I	H	R	P	T	W	V	S	V	D	L	D	A	A	A	H	N	L	Q	E	I	R	E	W	T	K	A	K	K	V	Y	A	V	L	K	A	D	G	Y	G	L	G	A	I	P	L	A	K	A	F	Q	E	T	A	S	A	D	A	L	I	V	S	N	L	D	E	A	L	E	L	R	Q	A	D	L	T	L	P	I	W
Template Known Secondary structure			S																								T		S													T												T	T			S					S											T	T			S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	.	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L
Query Conservation																																																												.
Alig confidence				.																														.	.																									.
Template Conservation				.																														.	.
Template Sequence		V	L	.	G	A	W	D	Y	S	D	L	K	L	F	I	D	H	D	I	V	I	T	I	P	S	L	A	W	L	Q	N	L	.	.	P	D	F	E	G	T	L	K	V	S	L	A	I	D	T	G	M	T	R	I	G	F	D	K	A	D	E	I	S	A	A	K	K	I	I	D	K	N	P	Q	L	D	L	F	S	V
Template Known Secondary structure			S	.	S				G	G	G							T	T													T		.	.				S	S								B			S	S		S	S	S	B																	T	T
Template Predicted Secondary structure				.																														.	.
Template SS confidence
		85	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		157	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																	.	.	.															.	.	.																						.
Query SS confidence														.	.	.	.	.																	.	.	.															.	.	.																						.
Query Sequence		M	S	H	F	A	E	A	E	H	P	D	G	.	.	.	.	.	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	.	.	.	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	.	Q	W	R	D	I
Query Conservation														.	.	.	.	.																	.	.	.															.	.	.																						.
Alig confidence														.	.	.	.	.																	.	.	.															.	.	.																						.
Template Conservation
Template Sequence		Y	T	H	F	A	T	A	D	E	A	G	E	K	S	K	A	Y	F	E	E	Q	L	R	R	W	Q	E	L	T	I	N	Q	G	F	D	P	S	L	F	S	M	A	N	S	A	T	C	I	W	H	H	D	D	P	R	I	S	F	A	A	I	R	P	G	Q	L	I	S	G	V	N	V	S	N	G	E	L	K	M	P
Template Known Secondary structure						T	T	T	T	S		S																			T	T	S				G	G	G												T	T	T		T	T	S			S						G	G	G	G	T			T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		P	N	L	H	L	E	R	I	F	S	V	C	S	E	I	A	D	V	R	F	V	K	K	D	Q	S	L	S	Y	G	A	S	E	R	M	P	E	D	G	Y	V	A	T	L	P	F	G	Y	N	D	G	W	L	R	R	M	.	Q	K	S	S	V	I	I	N	G	K	R	M	P	I	I	G	R	I	T	M	D	Q	T
Template Known Secondary structure		T	T																					T	T		B	S	S	T	T		S		B		S	S	S							S			T	T		G	G	G	G	G		.								T	T					B		S				S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation																								.	.	.	.
Alig confidence								.	.															.	.	.	.
Template Conservation								.	.
Template Sequence		M	V	K	L	D	R	.	.	K	Y	P	I	G	T	R	V	T	L	I	G	K	D	G	G	E	Q	I	T	V	E	E	V	A	N	Y	S	H	T	I	V	D	E	I	Q	T	T	L	A	P	R	I	K	R	I	Y	T
Template Known Secondary structure						S	S	.	.				T	T								S	S	T	T			S									S	S										S		T	T	S
Template Predicted Secondary structure								.	.
Template SS confidence
		321	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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