Phyre 2 alignment of P29012 with c3gwqB

Job Description P29012
Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012

Rank 26 Aligned Residues 310

% Identity 11% Template c3gwqB_

PDB info PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.	.																									.	.
Query SS confidence																											.	.																									.	.
Query Sequence	M	T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I
Query Conservation																											.	.																									.	.
Alig confidence						.																					.	.											.	.	.	.											.	.																								.
Template Conservation						.																																	.	.	.	.																																				.
Template Sequence	V	S	L	P	A	.	A	V	L	Y	A	D	R	V	E	H	N	L	K	W	X	Q	A	F	V	A	E	Y	G	V	K	L	A	P	H	G	K	T	.	.	.	.	T	X	A	P	Q	L	F	R	R	Q	L	E	T	G	A	W	G	I	T	L	A	T	A	H	Q	V	R	A	A	Y	H	G	G	V	S	.	R	V
Template Known Secondary structure	S		S	S		.																					S	S	S						B		T	T	.	.	.	.	T												T	T							S	S										T	T			.
Template Predicted Secondary structure						.																																	.	.	.	.																																				.
Template SS confidence
	43	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																				.	.																								.
Query SS confidence																		.	.	.	.	.	.																				.	.																								.
Query Sequence	L	M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	.	.	.	.	.	.	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	.	.	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	Q	P	.	D	R	V	L	T	V	W	Q	Q	L	R	A
Query Conservation																		.	.	.	.	.	.																				.	.																								.
Alig confidence																		.	.	.	.	.	.																				.	.																								.
Template Conservation
Template Sequence	L	X	A	N	Q	L	V	G	R	R	N	X	X	X	V	A	E	L	L	S	D	P	E	F	E	F	F	C	L	V	D	S	V	E	G	V	E	Q	L	G	E	F	F	K	S	V	N	K	Q	L	Q	V	L	L	E	L	G	V	P	G	G	R	T	G	V	R	D	A	A	Q	R	N	A	V	L	E	A	I	T	R
Template Known Secondary structure								S									T	T	T	T		T	T																							T	T												T	T	S	S	S	S	B		S													T
Template Predicted Secondary structure
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

	148	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure				.																																		.	.	.	.	.	.	.	.	.
Query SS confidence				.																																		.	.	.	.	.	.	.	.	.
Query Sequence	M	A	N	.	V	G	E	M	T	L	M	S	H	F	A	E	A	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	.	.	.	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P
Query Conservation				.																																		.	.	.	.	.	.	.	.	.
Alig confidence				.																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	P	D	T	L	K	L	A	G	V	E	L	Y	E	G	V	L	K	E	E	H	E	V	R	E	F	L	Q	S	A	V	A	V	T	R	E	L	V	E	Q	E	R	F	A	R	A	P	A	V	L	S	G	A	G	S	A	W	Y	D	V	V	A	E	E	F	V	K	A	S	E	T	G	K	V	E	V	V	L	R	P
Template Known Secondary structure	S	T	T	T										G	G	G			S																					T	T			S	S	S	S								S	T	T													T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G
Query Conservation
Alig confidence							.	.																		.	.																																.	.	.	.	.	.
Template Conservation							.	.																		.	.																																.	.	.	.	.	.
Template Sequence	G	C	Y	L	T	X	.	.	G	E	G	L	L	P	A	L	Q	L	W	A	Y	V	Q	S	I	.	.	P	E	P	D	R	A	I	I	G	L	G	K	R	D	S	A	F	D	A	G	X	P	E	P	A	R	H	Y	R	P	G	.	.	.	.	.	.	N	E	A	P	R	D	I	A	A	S	E	G	W	E	I	F
Template Known Secondary structure			S				.	.		T	T															.	.			T	T					S			T	T	T	S		G	G	G											T	T	.	.	.	.	.	.	S	S	S						G	G	G
Template Predicted Secondary structure							.	.																		.	.																																.	.	.	.	.	.
Template SS confidence
	277	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	S	M	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	L	X	D	Q	H	A	Y	L	R	I	P	A	G	A	D	L	K	V	G	D	X	I	A	F	D	I	S	H
Template Known Secondary structure				S	S								T	T		S			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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