Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 5 Aligned Residues 349 % Identity 35% Template c3e6eC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																									.	.
Query SS confidence																											.																									.	.
Query Sequence		T	R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	.	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M
Query Conservation																											.																									.	.
Alig confidence																											.																									.	.
Template Conservation
Template Sequence		H	R	P	T	R	L	H	I	D	T	Q	A	I	T	E	N	V	Q	K	E	C	Q	R	L	P	E	G	T	A	L	F	A	V	V	K	A	N	G	Y	G	H	G	A	V	E	S	A	K	A	A	K	K	G	G	A	T	G	F	C	V	A	L	L	D	E	A	I	E	L	R	E	A	G	V	Q	D	P	I	L	I
Template Known Secondary structure		T	S	S																			T	T	S		T	T														T											T	T	T							S	S										T	T			S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																				.	.	.																						.
Query SS confidence																																				.	.	.																						.
Query Sequence		L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	.	.	.	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	.	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M
Query Conservation																																				.	.	.																						.
Alig confidence			.																																	.	.	.																						.
Template Conservation			.
Template Sequence		L	.	S	V	V	D	L	A	Y	V	P	L	L	I	Q	Y	D	L	S	V	T	V	A	T	Q	E	W	L	E	A	A	L	Q	Q	L	T	P	E	S	N	T	P	L	R	V	H	L	K	V	D	T	G	M	G	R	I	G	F	L	T	P	E	E	T	K	Q	A	V	R	F	V	Q	S	H	K	E	F	L	W	E
Template Known Secondary structure			.	S				G	G	G							T	T																T	T	S		T	T		S	S								B		S	S	S		S	S	S	B															T		T	T
Template Predicted Secondary structure			.
Template SS confidence
		86		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																		.	.	.
Query SS confidence															.	.																		.	.	.
Query Sequence		T	L	M	S	H	F	A	E	A	E	H	P	D	.	.	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	E	.	.	.	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L
Query Conservation															.	.																		.	.	.
Alig confidence															.	.																		.	.	.																																					.
Template Conservation																																																																									.
Template Sequence		G	I	F	T	H	F	S	T	A	D	E	I	D	T	S	Y	F	E	K	Q	A	G	R	F	K	A	V	L	A	V	L	E	E	L	P	R	Y	V	H	V	S	N	S	A	T	A	L	W	H	P	D	V	P	G	N	M	I	R	Y	G	V	A	M	Y	G	L	N	P	S	G	N	.	K	L	A	P	S	Y	A	L
Template Known Secondary structure								S	S	T	T	S	S																	T	T		S	S			S															S	S			S						G	G	G	G	T			T	T	T	T	.	S	S			S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		K	P	A	L	R	L	T	S	E	L	I	H	V	K	R	L	A	A	G	E	G	I	G	Y	G	E	T	Y	V	T	E	A	E	E	W	I	G	T	V	P	I	G	Y	A	D	G	W	L	R	H	L	Q	G	F	.	T	V	L	V	N	G	K	R	C	E	I	V	G	R	V	C	M	D	Q	C	M	I	R	L	A
Template Known Secondary structure												S							T	T				S	G	G	G					S	S	S							S			T	T	T	T			G	G	G	T	T		.					T	T							S				S	S							S
Template Predicted Secondary structure																																																								.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T
Query Conservation																			.	.	.	.
Alig confidence			.	.															.	.	.	.
Template Conservation			.	.
Template Sequence		E	.	.	E	V	P	V	G	P	V	V	T	L	V	G	K	D	G	N	E	E	N	T	L	Q	M	V	A	E	K	L	E	T	I	H	Y	E	V	A	C	T	F	S	Q	R	I	P	R	E	Y
Template Known Secondary structure		S	.	.				S											T	T													T	S									S		T	T	S
Template Predicted Secondary structure			.	.
Template SS confidence
		323			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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