Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 12 Aligned Residues 330 % Identity 28% Template c3co8B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni Resolution 1.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		R	P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	G	P	I	L	M	L	E
Query Conservation																																																		.	.
Alig confidence																																																		.	.																														.
Template Conservation																																																																																	.
Template Sequence		R	S	T	R	I	E	F	S	K	S	S	L	A	Y	N	V	Q	Y	T	K	Q	V	S	G	A	K	T	L	W	L	A	V	K	S	N	A	Y	G	H	G	L	L	Q	V	S	K	I	A	R	E	C	G	V	D	G	L	A	V	S	V	L	D	E	G	I	A	I	R	Q	A	G	I	D	D	F	I	L	I	L	.
Template Known Secondary structure																											S												T	T									T	T	T	T	T							S	S										T	T			S						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.														.
Query SS confidence																																																							.														.
Query Sequence		G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	N	R	L	G	F	.	Q	P	D	R	V	L	T	V	W	Q	Q	L	R	.	A	M	A	N	V	G	E	M	T	L	M	S
Query Conservation																																																							.														.
Alig confidence																																																							.														.
Template Conservation
Template Sequence		G	P	I	D	V	K	Y	A	P	I	A	S	K	Y	H	F	L	T	T	V	S	S	L	D	W	L	K	S	A	D	K	I	L	G	K	E	K	L	S	V	N	L	A	V	D	T	G	X	N	R	I	G	V	R	S	K	K	D	L	K	D	E	I	E	F	L	Q	E	H	S	D	H	F	S	Y	D	G	I	F	T
Template Known Secondary structure		S				G	G	G							T	T																T	T		T	T									B		S	S	S		S	S	S	B		S														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure												.	.																.	.																		.	.	.
Query SS confidence												.	.																.	.																		.	.	.
Query Sequence		H	F	A	E	A	E	H	P	D	G	.	.	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	.	.	.	A	H	F	D	W	V	R	P	G	I	I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P
Query Conservation												.	.																.	.																		.	.	.
Alig confidence												.	.																.	.																		.	.	.																											.
Template Conservation																																																																													.
Template Sequence		H	F	A	S	S	D	N	P	D	D	H	Y	F	Q	R	Q	K	N	R	W	Y	E	L	I	D	G	L	I	X	P	R	Y	V	H	V	X	N	S	G	A	A	X	Y	H	S	K	E	L	P	G	C	N	S	I	A	R	V	G	T	V	V	Y	G	V	E	P	S	E	G	V	L	G	P	I	D	.	K	L	K	P
Template Known Secondary structure				S	S	T	T		S																	T	T	S				S					B								S	G	G	G		T	T	S		S					S	T	T	T	T	T			T	T	S	S	S	S	S		S	T	.	T	S
Template Predicted Secondary structure																																																																													.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G	V	R	T	M	T	V	G	T	V	S	M	D	M	L	A	V	D	L	T	P	C
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																												.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																												.
Template Sequence		V	F	E	L	K	S	A	L	T	F	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	W	I	G	T	L	P	I	G	Y	G	D	G	W	L	A	E	Y	Q	D	.	F	Q	L	L	I	D	G	Q	K	C	R	Q	V	G	Q	I	A	X	D	Q	X	X	V	A	L	P	H	.
Template Known Secondary structure										S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S			G	G	G	T			G	G	G	T	T	.						T	T							S				S	S							S	S	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																												.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.																				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		P	Q	A	G	I	G	T	P	V	E	L	W	G	K	E	.	.	.	.	I	K	I	D	D	V	A	A	A	A	G	T	V	G	Y	E	L	M	C	A	L	A	L	R	V	P	V	V	T	V
Query Conservation																	.	.	.	.
Alig confidence		.															.	.	.	.
Template Conservation		.
Template Sequence		.	E	Y	P	I	G	T	E	V	T	L	I	G	K	S	G	K	Y	E	N	T	L	Y	D	L	H	K	H	S	G	V	P	P	W	K	I	T	V	A	F	S	D	R	L	K	R	X	V	V
Template Known Secondary structure		.				T	T										T	T													S									T	S		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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